How complete are current yeast and human protein-interaction networks?

被引:278
作者
Hart, G. Traver [1 ]
Ramani, Arun K. [1 ]
Marcotte, Edward M. [1 ]
机构
[1] Univ Texas, Inst Mol & Cellular Biol, Ctr Syst & Synth Biol, Austin, TX 78712 USA
关键词
D O I
10.1186/gb-2006-7-11-120
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
We estimate the full yeast protein-protein interaction network to contain 37,800-75,500 interactions and the human network 154,000-369,000, but owing to a high false-positive rate, current maps are roughly only 50% and 10% complete, respectively. Paradoxically, releasing raw, unfiltered assay data might help separate true from false interactions.
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页数:9
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共 56 条
[31]   Expression dynamics of a cellular metabolic network [J].
Kharchenko, Peter ;
Church, George M. ;
Vitkup, Dennis .
MOLECULAR SYSTEMS BIOLOGY, 2005, 1 (1) :2005.0016
[32]   An endoribonuclease-prepared siRNA screen in human cells identifies genes essential for cell division [J].
Kittler, R ;
Putz, G ;
Pelletier, L ;
Poser, I ;
Heninger, AK ;
Drechsel, D ;
Fischer, S ;
Konstantinova, I ;
Habermann, B ;
Grabner, H ;
Yaspo, ML ;
Himmelbauer, H ;
Korn, B ;
Neugebauer, K ;
Pisabarro, MT ;
Buchholz, F .
NATURE, 2004, 432 (7020) :1036-1040
[33]   Global landscape of protein complexes in the yeast Saccharomyces cerevisiae [J].
Krogan, NJ ;
Cagney, G ;
Yu, HY ;
Zhong, GQ ;
Guo, XH ;
Ignatchenko, A ;
Li, J ;
Pu, SY ;
Datta, N ;
Tikuisis, AP ;
Punna, T ;
Peregrín-Alvarez, JM ;
Shales, M ;
Zhang, X ;
Davey, M ;
Robinson, MD ;
Paccanaro, A ;
Bray, JE ;
Sheung, A ;
Beattie, B ;
Richards, DP ;
Canadien, V ;
Lalev, A ;
Mena, F ;
Wong, P ;
Starostine, A ;
Canete, MM ;
Vlasblom, J ;
Wu, S ;
Orsi, C ;
Collins, SR ;
Chandran, S ;
Haw, R ;
Rilstone, JJ ;
Gandi, K ;
Thompson, NJ ;
Musso, G ;
St Onge, P ;
Ghanny, S ;
Lam, MHY ;
Butland, G ;
Altaf-Ui, AM ;
Kanaya, S ;
Shilatifard, A ;
O'Shea, E ;
Weissman, JS ;
Ingles, CJ ;
Hughes, TR ;
Parkinson, J ;
Gerstein, M .
NATURE, 2006, 440 (7084) :637-643
[34]   A probabilistic functional network of yeast genes [J].
Lee, I ;
Date, SV ;
Adai, AT ;
Marcotte, EM .
SCIENCE, 2004, 306 (5701) :1555-1558
[35]  
LEE I, 2007, YEAST GENE ANAL
[36]   Protein-protein interaction maps: a lead towards cellular functions [J].
Legrain, P ;
Wojcik, J ;
Gauthier, JM .
TRENDS IN GENETICS, 2001, 17 (06) :346-352
[37]   A first-draft human protein-interaction map [J].
Lehner, B ;
Fraser, AG .
GENOME BIOLOGY, 2004, 5 (09)
[38]   Systems-level analyses identify extensive coupling among gene expression machines [J].
Maciag, Karolina ;
Altschuler, Steven J. ;
Slack, Michael D. ;
Krogan, Nevan J. ;
Emili, Andrew ;
Greenblatt, Jack F. ;
Maniatis, Tom ;
Wu, Lani F. .
MOLECULAR SYSTEMS BIOLOGY, 2006, 2 (1) :2006.0003
[39]   Predictome: a database of putative functional links between proteins [J].
Mellor, JC ;
Yanai, I ;
Clodfelter, KH ;
Mintseris, J ;
DeLisi, C .
NUCLEIC ACIDS RESEARCH, 2002, 30 (01) :306-309
[40]   Human protein reference database - 2006 update [J].
Mishra, Gopa R. ;
Suresh, M. ;
Kumaran, K. ;
Kannabiran, N. ;
Suresh, Shubha ;
Bala, P. ;
Shivakumar, K. ;
Anuradha, N. ;
Reddy, Raghunath ;
Raghavan, T. Madhan ;
Menon, Shalini ;
Hanumanthu, G. ;
Gupta, Malvika ;
Upendran, Sapna ;
Gupta, Shweta ;
Mahesh, M. ;
Jacob, Bincy ;
Mathew, Pinky ;
Chatterjee, Pritam ;
Arun, K. S. ;
Sharma, Salil ;
Chandrika, K. N. ;
Deshpande, Nandan ;
Palvankar, Kshitish ;
Raghavnath, R. ;
Krishnakanth, R. ;
Karathia, Hiren ;
Rekha, B. ;
Nayak, Rashmi ;
Vishnupriya, G. ;
Kumar, H. G. Mohan ;
Nagini, M. ;
Kumar, G. S. Sameer ;
Jose, Rojan ;
Deepthi, P. ;
Mohan, S. Sujatha ;
Gandhi, T. K. B. ;
Harsha, H. C. ;
Deshpande, Krishna S. ;
Sarker, Malabika ;
Prasad, T. S. Keshava ;
Pandey, Akhilesh .
NUCLEIC ACIDS RESEARCH, 2006, 34 :D411-D414