A Statistical Evaluation of Models for the Initial Settlement of the American Continent Emphasizes the Importance of Gene Flow with Asia

被引:65
作者
Ray, N. [1 ,2 ]
Wegmann, D. [1 ,2 ]
Fagundes, N. J. R. [3 ]
Wang, S. [4 ]
Ruiz-Linares, A. [4 ]
Excoffier, L. [1 ,2 ]
机构
[1] Univ Bern, Inst Ecol & Evolut, Bern, Switzerland
[2] Swiss Inst Bioinformat, Lausanne, Switzerland
[3] Univ Fed Rio Grande do Sul, Dept Genet, Porto Alegre, RS, Brazil
[4] UCL, Galton Lab, Dept Genet Evolut & Environm, London, England
基金
瑞士国家科学基金会;
关键词
human settlement; colonization; Amerindians; approximate Bayesian computation; model choice; APPROXIMATE BAYESIAN COMPUTATION; PARTIAL LEAST-SQUARES; MODERN HUMANS; NEW-WORLD; Y-CHROMOSOMES; SOUTH-AMERICA; POPULATION; ORIGIN; SINGLE; DIVERSITY;
D O I
10.1093/molbev/msp238
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Although there is agreement in that the Bering Strait was the entry point for the initial colonization of the American continent, there is considerable uncertainty regarding the timing and pattern of human migration from Asia to America. In order to perform a statistical assessment of the relative probability of alternative migration scenarios and to estimate key demographic parameters associated with them, we used an approximate Bayesian computation framework to analyze a data set of 401 autosomal microsatellite loci typed in 29 native American populations. A major finding is that a single, discrete, wave of colonization is highly inconsistent with observed levels of genetic diversity. A scenario with two discrete migration waves is also not supported by the data. The current genetic diversity of Amerindian populations is best explained by a third model involving recurrent gene flow between Asia and America, after initial colonization. We estimate that this colonization involved about 100 individuals and occurred some 13,000 years ago, in agreement with well-established archeological data.
引用
收藏
页码:337 / 345
页数:9
相关论文
共 60 条
[31]   SIMCOAL 2.0: a program to simulate genomic diversity over large recombining regions in a subdivided population with a complex history [J].
Laval, G ;
Excoffier, L .
BIOINFORMATICS, 2004, 20 (15) :2485-2487
[32]  
LEFEBVRE J, 1983, INTRO ANAL STAT MULT, P102
[33]   The dual origin and Siberian affinities of native American Y chromosomes [J].
Lell, JT ;
Sukernik, RI ;
Starikovskaya, YB ;
Su, B ;
Jin, L ;
Schurr, TG ;
Underhill, PA ;
Wallace, DC .
AMERICAN JOURNAL OF HUMAN GENETICS, 2002, 70 (01) :192-206
[34]  
MacKay D. J. C., 2003, Information Theory, Inference and Learning Algorithms
[35]   DISCOVERY OF AMERICA [J].
MARTIN, PS .
SCIENCE, 1973, 179 (4077) :969-974
[36]   The four founding lineage hypothesis for the New World: A critical reevaluation [J].
Merriwether, DA ;
Ferrell, RE .
MOLECULAR PHYLOGENETICS AND EVOLUTION, 1996, 5 (01) :241-246
[37]   DISTRIBUTION OF THE 4 FOUNDING LINEAGE HAPLOTYPES IN NATIVE-AMERICANS SUGGESTS A SINGLE WAVE OF MIGRATION FOR THE NEW-WORLD [J].
MERRIWETHER, DA ;
ROTHHAMMER, F ;
FERRELL, RE .
AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY, 1995, 98 (04) :411-430
[38]   The pls package: Principal component and partial least squares regression in R [J].
Mevik, Bjorn-Helge ;
Wehrens, Ron .
JOURNAL OF STATISTICAL SOFTWARE, 2007, 18 (02) :1-23
[39]   Multiple transatlantic introductions of the western corn rootworm [J].
Miller, N ;
Estoup, A ;
Toepfer, S ;
Bourguet, D ;
Lapchin, L ;
Derridj, S ;
Kim, KS ;
Reynaud, P ;
Furlan, L ;
Guillemaud, T .
SCIENCE, 2005, 310 (5750) :992-992
[40]  
Neuenschwander S, 2008, MOL ECOL, V17, P757, DOI 10.1111/j.1365-294X.2007.03621.x