Molecular dynamics simulations of glycine crystal-solution interface

被引:29
作者
Banerjee, Soumik [2 ]
Briesen, Heiko [1 ]
机构
[1] Tech Univ Munich, D-85350 Freising Weihenstephan, Germany
[2] Max Planck Inst Dynam Complex Tech Syst, D-39106 Magdeburg, Germany
关键词
HYDROGEN-BOND DYNAMICS; AQUEOUS-SOLUTION; GAMMA-GLYCINE; AMINO-ACIDS; FORCE-FIELD; WATER; GROWTH; CRYSTALLIZATION; NUCLEATION; DIFFUSION;
D O I
10.1063/1.3258650
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Glycine is an amino acid that has several applications in the pharmaceutical industry. Hence, growth of alpha-glycine crystals through solution crystallization is an important process. To gain a fundamental understanding of the seeded growth of alpha-glycine from aqueous solution, the (110) face of alpha-glycine crystal in contact with a solution of glycine in water has been simulated with molecular dynamics. The temporal change in the location of the interface of the alpha-glycine crystal seed has been characterized by detecting a density gradient. It is found that the alpha-glycine crystal dissolves with time at a progressively decreasing rate. Diffusion coefficients of glycine adjacent to (110) face of alpha-glycine crystal have been calculated at various temperatures (280, 285, 290, 295, and 300 K) and concentrations (3.6, 4.5, and 6.0 mol/l) and compared to that in the bulk solution. In order to gain a fundamental insight into the nature of variation in such properties at the interface and the bulk, the formation of hydrogen bonds at various temperatures and concentrations has been investigated. It is found that the nature of interaction between various atoms of glycine molecules, as characterized by radial distribution functions, can provide interesting insight into the formation of hydrogen bonds that in turn affect the diffusion coefficients at the interface. (C) 2009 American Institute of Physics. [doi: 10.1063/1.3258650]
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页数:8
相关论文
共 35 条
[11]   Nucleation of Crystals from Solution: Classical and Two-Step Models [J].
Erdemir, Deniz ;
Lee, Alfred Y. ;
Myerson, Allan S. .
ACCOUNTS OF CHEMICAL RESEARCH, 2009, 42 (05) :621-629
[12]   GDIS: a visualization program for molecular and periodic systems [J].
Fleming, S ;
Rohl, A .
ZEITSCHRIFT FUR KRISTALLOGRAPHIE, 2005, 220 (5-6) :580-584
[13]  
Frankel M, 1930, BIOCHEM Z, V217, P378
[14]  
Haile J.M., 1992, Molecular Dynamics Simulation: Elementary Methods
[15]   Clustering of glycine molecules in aqueous solution studied by molecular dynamics simulation [J].
Hamad, Said ;
Hughes, Colan E. ;
Catlow, C. Richard A. ;
Harris, Kenneth D. M. .
JOURNAL OF PHYSICAL CHEMISTRY B, 2008, 112 (24) :7280-7288
[16]   A multi-techuique approach for probing the evolution of structural properties during crystallization of organic materials from solution [J].
Hughes, Colan E. ;
Hamad, Said ;
Harris, Kenneth D. M. ;
Catlow, C. Richard A. ;
Griffiths, Peter C. .
FARADAY DISCUSSIONS, 2007, 136 :71-89
[17]   The riddle of resorcinol crystal growth revisited:: Molecular dynamics simulations of α-resorcinol crystal-water interface [J].
Hussain, M ;
Anwar, J .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1999, 121 (37) :8583-8591
[18]  
KISELNIK VV, 1973, ZH STRUKT KHIM, V14, P963
[19]   Structural characterization of crystals of α-glycine during anomalous electrical behaviour [J].
Langan, P ;
Mason, SA ;
Myles, D ;
Schoenborn, BP .
ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE, 2002, 58 :728-733
[20]   GROMACS 3.0: a package for molecular simulation and trajectory analysis [J].
Lindahl, E ;
Hess, B ;
van der Spoel, D .
JOURNAL OF MOLECULAR MODELING, 2001, 7 (08) :306-317