Tailored graph ensembles as proxies or null models for real networks I: tools for quantifying structure

被引:35
作者
Annibale, A. [1 ]
Coolen, A. C. C. [1 ,2 ]
Fernandes, L. P. [2 ]
Fraternali, F. [2 ]
Kleinjung, J. [3 ]
机构
[1] Kings Coll London, Dept Math, Strand, London WC2R 2LS, England
[2] Kings Coll London, Randall Div Cell & Mol Biophys, London SE1 1UL, England
[3] Natl Inst Med Res, MRC, London NW7 1AA, England
基金
英国工程与自然科学研究理事会;
关键词
PROTEIN-PROTEIN INTERACTION; INTERACTION MAP; INTERACTOME; IDENTIFICATION; COMPLEXES;
D O I
10.1088/1751-8113/42/48/485001
中图分类号
O4 [物理学];
学科分类号
0702 ;
摘要
We study the tailoring of structured random graph ensembles to real networks, with the objective of generating precise and practical mathematical tools for quantifying and comparing network topologies macroscopically, beyond the level of degree statistics. Our family of ensembles can produce graphs with any prescribed degree distribution and any degree-degree correlation function; its control parameters can be calculated fully analytically, and as a result we can calculate (asymptotically) formulae for entropies and complexities and for information-theoretic distances between networks, expressed directly and explicitly in terms of their measured degree distribution and degree correlations.
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页数:25
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