Structure-Based Drug Design Strategies in Medicinal Chemistry

被引:124
作者
Andricopulo, Adriano D. [1 ]
Salum, Livia B. [1 ]
Abraham, Donald J. [2 ]
机构
[1] Univ Sao Paulo, Inst Fis Sao Carlos, Ctr Biotecnol Mol Estrutural, Lab Quim Med & Computac, BR-13560970 Sao Carlos, SP, Brazil
[2] Virginia Commonwealth Univ, Inst Struct Biol & Drug Discovery, Sch Pharm, Dept Med Chem, Richmond, VA 23284 USA
基金
巴西圣保罗研究基金会;
关键词
Structure-based drug design; medicinal chemistry; virtual screening; QSAR; pharmacophores; STRUCTURE-BASED OPTIMIZATION; STRUCTURE-BASED DISCOVERY; PROTEIN-LIGAND COMPLEXES; MOLECULAR-FIELD ANALYSIS; HUMAN CARBONIC-ANHYDRASE; FRAGMENT-BASED QSAR; LEAD OPTIMIZATION; FLEXIBLE DOCKING; GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE; PHARMACOPHORE MODEL;
D O I
10.2174/156802609789207127
中图分类号
R914 [药物化学];
学科分类号
100701 ;
摘要
A broad variety of medicinal chemistry approaches can be used for the identification of hits, generation of leads, as well as to accelerate the development of high quality drug candidates. Structure-based drug design (SBDD) methods are becoming increasingly powerful, versatile and more widely used. This review summarizes current developments in structure-based virtual screening and receptor-based pharmacophores, highlighting achievements as well as challenges, along with the value of structure-based lead optimization, with emphasis on recent examples of successful applications for the identification of novel active compounds.
引用
收藏
页码:771 / 790
页数:20
相关论文
共 137 条
[31]   Successful virtual screening for a submicromolar antagonist of the neurokinin-1 receptor based on a ligand-supported homology model [J].
Evers, A ;
Klebe, G .
JOURNAL OF MEDICINAL CHEMISTRY, 2004, 47 (22) :5381-5392
[32]   EVA: A new theoretically based molecular descriptor for use in QSAR/QSPR analysis [J].
Ferguson, AM ;
Heritage, T ;
Jonathon, P ;
Pack, SE ;
Phillips, L ;
Rogan, J ;
Snaith, PJ .
JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN, 1997, 11 (02) :143-152
[33]   Simple, intuitive calculations of free energy of binding for protein-ligand complexes. 3. The free energy contribution of structural water molecules in HIV-1 protease complexes [J].
Fornabaio, M ;
Spyrakis, F ;
Mozzarelli, A ;
Cozzini, P ;
Abraham, DJ ;
Kellogg, GE .
JOURNAL OF MEDICINAL CHEMISTRY, 2004, 47 (18) :4507-4516
[34]   A combination of 3D-QSAR, docking, local-binding energy (LBE) and GRID study of the species differences in the carcinogenicity of benzene derivatives chemicals [J].
Fratev, Filip ;
Benfenati, Emilio .
JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 2008, 27 (02) :147-160
[35]   Glide: A new approach for rapid, accurate docking and scoring. 1. Method and assessment of docking accuracy [J].
Friesner, RA ;
Banks, JL ;
Murphy, RB ;
Halgren, TA ;
Klicic, JJ ;
Mainz, DT ;
Repasky, MP ;
Knoll, EH ;
Shelley, M ;
Perry, JK ;
Shaw, DE ;
Francis, P ;
Shenkin, PS .
JOURNAL OF MEDICINAL CHEMISTRY, 2004, 47 (07) :1739-1749
[36]  
Gedeck P, 2008, CURR OPIN DRUG DISC, V11, P569
[37]   Structure-based virtual screening of chemical libraries for drug discovery [J].
Ghosh, Sutapa ;
Nie, Aihua ;
An, Jing ;
Huang, Ziwei .
CURRENT OPINION IN CHEMICAL BIOLOGY, 2006, 10 (03) :194-202
[38]   CYCLOTHIALIDINE AND ITS CONGENERS - A NEW CLASS OF DNA GYRASE INHIBITORS [J].
GOETSCHI, E ;
ANGEHRN, P ;
GMUENDER, H ;
HEBEISEN, P ;
LINK, H ;
MASCIADRI, R ;
NIELSEN, J .
PHARMACOLOGY & THERAPEUTICS, 1993, 60 (02) :367-380
[39]   Predicting binding modes, binding affinities and 'hot spots' for protein-ligand complexes using a knowledge-based scoring function [J].
Gohlke, H ;
Hendlich, M ;
Klebe, G .
PERSPECTIVES IN DRUG DISCOVERY AND DESIGN, 2000, 20 (01) :115-144
[40]  
Gohlke H, 2002, ANGEW CHEM INT EDIT, V41, P2645