Compaction and folding in model proteins

被引:5
作者
Chiu, TL
Goldstein, RA
机构
[1] UNIV MICHIGAN,DEPT CHEM,ANN ARBOR,MI 48109
[2] UNIV MICHIGAN,DIV BIOPHYS RES,ANN ARBOR,MI 48109
关键词
D O I
10.1063/1.474782
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Protein folding is modeled as diffusion on a free-energy landscape, allowing use of the diffusion equation to study the impact of energetic parameters on the folding dynamics. The free-energy landscape is characterized by two different order parameters, one representing the degree of compactness, the other a measure of the progress towards the folded state. For marginally stable proteins, fastest folding is achieved when the nonspecific interactions favoring compaction are strong, resulting in a high folding temperature. Such proteins fold by rapid collapse followed by slower accumulation of correct contacts. (C) 1997 American Institute of Physics.
引用
收藏
页码:4408 / 4415
页数:8
相关论文
共 43 条
[1]   Improved design of stable and fast-folding model proteins [J].
Abkevich, VI ;
Gutin, AM ;
Shakhnovich, EI .
FOLDING & DESIGN, 1996, 1 (03) :221-230
[2]   SPECIFIC NUCLEUS AS THE TRANSITION-STATE FOR PROTEIN-FOLDING - EVIDENCE FROM THE LATTICE MODEL [J].
ABKEVICH, VI ;
GUTIN, AM ;
SHAKHNOVICH, EI .
BIOCHEMISTRY, 1994, 33 (33) :10026-10036
[3]   INITIAL HYDROPHOBIC COLLAPSE IN THE FOLDING OF BARSTAR [J].
AGASHE, VR ;
SHASTRY, MCR ;
UDGAONKAR, JB .
NATURE, 1995, 377 (6551) :754-757
[4]   FUNNELS, PATHWAYS, AND THE ENERGY LANDSCAPE OF PROTEIN-FOLDING - A SYNTHESIS [J].
BRYNGELSON, JD ;
ONUCHIC, JN ;
SOCCI, ND ;
WOLYNES, PG .
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 1995, 21 (03) :167-195
[5]   SPIN-GLASSES AND THE STATISTICAL-MECHANICS OF PROTEIN FOLDING [J].
BRYNGELSON, JD ;
WOLYNES, PG .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1987, 84 (21) :7524-7528
[6]   INTERMEDIATES AND BARRIER CROSSING IN A RANDOM ENERGY-MODEL (WITH APPLICATIONS TO PROTEIN FOLDING) [J].
BRYNGELSON, JD ;
WOLYNES, PG .
JOURNAL OF PHYSICAL CHEMISTRY, 1989, 93 (19) :6902-6915
[7]  
BRYNGELSON JD, 1990, BIOPOLYMERS, V30, P171
[8]   KINETICS AND THERMODYNAMICS OF FOLDING IN MODEL PROTEINS [J].
CAMACHO, CJ ;
THIRUMALAI, D .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1993, 90 (13) :6369-6372
[9]   MINIMUM ENERGY COMPACT STRUCTURES OF RANDOM SEQUENCES OF HETEROPOLYMERS [J].
CAMACHO, CJ ;
THIRUMALAI, D .
PHYSICAL REVIEW LETTERS, 1993, 71 (15) :2505-2508
[10]   THE ISOLATED C-TERMINAL (F2) FRAGMENT OF THE ESCHERICHIA-COLI TRYPTOPHAN SYNTHASE BETA-2-SUBUNIT FOLDS INTO A STABLE, ORGANIZED NONNATIVE CONFORMATION [J].
CHAFFOTTE, A ;
GUILLOU, Y ;
DELEPIERRE, M ;
HINZ, HJ ;
GOLDBERG, ME .
BIOCHEMISTRY, 1991, 30 (32) :8067-8074