Improving prognostic performance in resectable pancreatic ductal adenocarcinoma using radiomics and deep learning features fusion in CT images

被引:42
作者
Zhang, Yucheng [1 ]
Lobo-Mueller, Edrise M. [2 ,3 ]
Karanicolas, Paul [4 ]
Gallinger, Steven [5 ]
Haider, Masoom A. [5 ,6 ]
Khalvati, Farzad [1 ,7 ,8 ,9 ]
机构
[1] Univ Toronto, Dept Med Imaging, 686 Bay St, Toronto, ON M5G 0A4, Canada
[2] Univ Alberta, Fac Med & Dent, Cross Canc Inst, Dept Diagnost Imaging, Edmonton, AB, Canada
[3] Univ Alberta, Fac Med & Dent, Cross Canc Inst, Dept Oncol, Edmonton, AB, Canada
[4] Sunnybrook Hlth Sci Ctr, Dept Surg, Toronto, ON, Canada
[5] Sinai Hlth Syst, Lunenfeld Tanenbaum Res Inst, Toronto, ON, Canada
[6] Univ Toronto, Univ Hlth Network, Joint Dept Med Imaging, Toronto, ON, Canada
[7] Hosp Sick Children, Dept Diagnost Imaging, Toronto, ON, Canada
[8] Hosp Sick Children, Res Inst, Toronto, ON, Canada
[9] Univ Toronto, Dept Mech & Ind Engn, Toronto, ON, Canada
关键词
SELECTION; SURVIVAL; NODULES;
D O I
10.1038/s41598-021-80998-y
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
070301 [无机化学]; 070403 [天体物理学]; 070507 [自然资源与国土空间规划学]; 090105 [作物生产系统与生态工程];
摘要
As an analytic pipeline for quantitative imaging feature extraction and analysis, radiomics has grown rapidly in the past decade. On the other hand, recent advances in deep learning and transfer learning have shown significant potential in the quantitative medical imaging field, raising the research question of whether deep transfer learning features have predictive information in addition to radiomics features. In this study, using CT images from Pancreatic Ductal Adenocarcinoma (PDAC) patients recruited in two independent hospitals, we discovered most transfer learning features have weak linear relationships with radiomics features, suggesting a potential complementary relationship between these two feature sets. We also tested the prognostic performance for overall survival using four feature fusion and reduction methods for combining radiomics and transfer learning features and compared the results with our proposed risk score-based feature fusion method. It was shown that the risk score-based feature fusion method significantly improves the prognosis performance for predicting overall survival in PDAC patients compared to other traditional feature reduction methods used in previous radiomics studies (40% increase in area under ROC curve (AUC) yielding AUC of 0.84).
引用
收藏
页数:11
相关论文
共 54 条
[1]
The Potential of Radiomic-Based Phenotyping in PrecisionMedicine A Review [J].
Aerts, Hugo J. W. L. .
JAMA ONCOLOGY, 2016, 2 (12) :1636-1642
[2]
Decoding tumour phenotype by noninvasive imaging using a quantitative radiomics approach [J].
Aerts, Hugo J. W. L. ;
Velazquez, Emmanuel Rios ;
Leijenaar, Ralph T. H. ;
Parmar, Chintan ;
Grossmann, Patrick ;
Cavalho, Sara ;
Bussink, Johan ;
Monshouwer, Rene ;
Haibe-Kains, Benjamin ;
Rietveld, Derek ;
Hoebers, Frank ;
Rietbergen, Michelle M. ;
Leemans, C. Rene ;
Dekker, Andre ;
Quackenbush, John ;
Gillies, Robert J. ;
Lambin, Philippe .
NATURE COMMUNICATIONS, 2014, 5
[3]
[Anonymous], 2017, KAGGLE DATASCIENCE B
[4]
The Lung Image Database Consortium, (LIDC) and Image Database Resource Initiative (IDRI): A Completed Reference Database of Lung Nodules on CT Scans [J].
Armato, Samuel G., III ;
McLennan, Geoffrey ;
Bidaut, Luc ;
McNitt-Gray, Michael F. ;
Meyer, Charles R. ;
Reeves, Anthony P. ;
Zhao, Binsheng ;
Aberle, Denise R. ;
Henschke, Claudia I. ;
Hoffman, Eric A. ;
Kazerooni, Ella A. ;
MacMahon, Heber ;
van Beek, Edwin J. R. ;
Yankelevitz, David ;
Biancardi, Alberto M. ;
Bland, Peyton H. ;
Brown, Matthew S. ;
Engelmann, Roger M. ;
Laderach, Gary E. ;
Max, Daniel ;
Pais, Richard C. ;
Qing, David P-Y ;
Roberts, Rachael Y. ;
Smith, Amanda R. ;
Starkey, Adam ;
Batra, Poonam ;
Caligiuri, Philip ;
Farooqi, Ali ;
Gladish, Gregory W. ;
Jude, C. Matilda ;
Munden, Reginald F. ;
Petkovska, Iva ;
Quint, Leslie E. ;
Schwartz, Lawrence H. ;
Sundaram, Baskaran ;
Dodd, Lori E. ;
Fenimore, Charles ;
Gur, David ;
Petrick, Nicholas ;
Freymann, John ;
Kirby, Justin ;
Hughes, Brian ;
Casteele, Alessi Vande ;
Gupte, Sangeeta ;
Sallam, Maha ;
Heath, Michael D. ;
Kuhn, Michael H. ;
Dharaiya, Ekta ;
Burns, Richard ;
Fryd, David S. .
MEDICAL PHYSICS, 2011, 38 (02) :915-931
[5]
SMOTE for high-dimensional class-imbalanced data [J].
Blagus, Rok ;
Lusa, Lara .
BMC BIOINFORMATICS, 2013, 14
[6]
Breiman L, 1996, MACH LEARN, V24, P49
[7]
Breiman L., 2001, IEEE Trans. Broadcast., V45, P5
[8]
A general introduction to adjustment for multiple comparisons [J].
Chen, Shi-Yi ;
Feng, Zhe ;
Yi, Xiaolian .
JOURNAL OF THORACIC DISEASE, 2017, 9 (06) :1725-1729
[9]
Ensemble methods in machine learning [J].
Dietterich, TG .
MULTIPLE CLASSIFIER SYSTEMS, 2000, 1857 :1-15
[10]
CT texture features are associated with overall survival in pancreatic ductal adenocarcinoma - a quantitative analysis [J].
Eilaghi, Armin ;
Baig, Sameer ;
Zhang, Yucheng ;
Zhang, Junjie ;
Karanicolas, Paul ;
Gallinger, Steven ;
Khalvati, Farzad ;
Haider, Masoom A. .
BMC MEDICAL IMAGING, 2017, 17