Historical evolution and current status of the taxonomy of genus Pseudomonas

被引:198
作者
Peix, Alvaro [2 ]
Ramirez-Bahena, Martha-Helena
Velazquez, Encarna [1 ]
机构
[1] Univ Salamanca, Dept Genet & Microbiol, Lab 209, Salamanca 37007, Spain
[2] IRNASA CSIC, Inst Recursos Nat & Agrobiol, Salamanca, Spain
关键词
Taxonomy; Pseudomonas; Phylogeny; Diversity; 16S RIBOSOMAL-RNA; CDC GROUP VE-1; SP-NOV; COMB-NOV; DEOXYRIBONUCLEIC-ACID; MASS-SPECTROMETRY; PLANT-GROWTH; PHYLOGENETIC-RELATIONSHIPS; EMENDED DESCRIPTION; CLINICAL SPECIMENS;
D O I
10.1016/j.meegid.2009.08.001
中图分类号
R51 [传染病];
学科分类号
100401 ;
摘要
The genus Pseudomonas was described in 1894 and is one of the most diverse and ubiquitous bacterial genera whose species have been isolated worldwide in all kinds of environments, from the Antarctica to the Tropics, present in sediments, clinical samples, plant, fungi and diseased animal specimens, water, soil, plant rhizosphere, sea, deserts, etc. The taxonomy of the genus has been controversial for years since a lot of bacterial taxa initially included in genus Pseudomonas have been reclassified in other genera or species from a different class of Proteobacteria over the years, as techniques for characterization and classification of microorganisms improved, aiming to set a phylogenetic classification of the species. In this review, the historical evolution of the taxonomy of Pseudomonas is described, and the currently valid criteria and future challenges for taxonomy of the genus and techniques used to achieve the necessary characterization for classifying the species are discussed. Finally, all the validly published Pseudomonas species at present are listed with an overview of their diversity and ecology. (C) 2009 Elsevier B.V. All rights reserved.
引用
收藏
页码:1132 / 1147
页数:16
相关论文
共 210 条
[1]   Pseudomonas brassicacearum sp nov and Pseudomonas thivervalensis sp nov., two root-associated bacteria isolated from Brassica napus and Arabidopsis thaliana [J].
Achouak, W ;
Sutra, L ;
Heulin, T ;
Meyer, JM ;
Fromin, N ;
Degraeve, S ;
Christen, R ;
Gardan, L .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2000, 50 :9-18
[2]   Pseudomonas frederiksbergensis sp nov., isolated from soil at a coal gasification site [J].
Andersen, SM ;
Johnsen, K ;
Sorensen, J ;
Nielsen, P ;
Jacobsen, CS .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2000, 50 :1957-1964
[3]   The phylogeny of the genera Chryseomonas, Flavimonas, and Pseudomonas supports synonymy of these three genera [J].
Anzai, Y ;
Kudo, Y ;
Oyaizu, H .
INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1997, 47 (02) :249-251
[4]   Phylogenetic affiliation of the pseudomonads based on 16S rRNA sequence [J].
Anzai, Y ;
Kim, H ;
Park, JY ;
Wakabayashi, H ;
Oyaizu, H .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2000, 50 :1563-1589
[5]   RAPID DIFFERENTIATION, BY POLYAMINE ANALYSIS, OF XANTHOMONAS STRAINS FROM PHYTOPATHOGENIC PSEUDOMONADS AND OTHER MEMBERS OF THE CLASS PROTEOBACTERIA INTERACTING WITH PLANTS [J].
AULING, G ;
BUSSE, HJ ;
PILZ, F ;
WEBB, L ;
KNEIFEL, H ;
CLAUS, D .
INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1991, 41 (02) :223-228
[6]   RECOVERY OF SERRATIA-PLYMUTHICA AND PRESUMPTIVE PSEUDOMONAS-PSEUDOALCALIGENES FROM SKIN-LESIONS IN RAINBOW-TROUT, ONCORHYNCHUS-MYKISS (WALBAUM), OTHERWISE INFECTED WITH ENTERIC REDMOUTH [J].
AUSTIN, B ;
STOBIE, M .
JOURNAL OF FISH DISEASES, 1992, 15 (06) :541-543
[7]   Molecular analysis of oral and respiratory bacterial species associated with ventilator-associated pneumonia [J].
Bahrani-Mougeot, Farah K. ;
Paster, Bruce J. ;
Coleman, Shirley ;
Barbuto, Sara ;
Brennan, Michael T. ;
Noll, Jenene ;
Kennedy, Thomas ;
Fox, Philip C. ;
Lockhart, Peter B. .
JOURNAL OF CLINICAL MICROBIOLOGY, 2007, 45 (05) :1588-1593
[8]  
Baïda N, 2002, INT J SYST EVOL MICR, V52, P1497, DOI [10.1099/ijs.0.01971-0, 10.1099/00207713-52-5-1497]
[9]   Pseudomonas brenneri sp nov., a new species isolated from natural mineral waters [J].
Baïda, N ;
Yazourh, A ;
Singer, E ;
Izard, D .
RESEARCH IN MICROBIOLOGY, 2001, 152 (05) :493-502
[10]   Induced systemic resistance by fluorescent Pseudomonas spp. [J].
Bakker, Peter A. H. M. ;
Pieterse, Corne M. J. ;
van Loon, L. C. .
PHYTOPATHOLOGY, 2007, 97 (02) :239-243