Historical evolution and current status of the taxonomy of genus Pseudomonas

被引:198
作者
Peix, Alvaro [2 ]
Ramirez-Bahena, Martha-Helena
Velazquez, Encarna [1 ]
机构
[1] Univ Salamanca, Dept Genet & Microbiol, Lab 209, Salamanca 37007, Spain
[2] IRNASA CSIC, Inst Recursos Nat & Agrobiol, Salamanca, Spain
关键词
Taxonomy; Pseudomonas; Phylogeny; Diversity; 16S RIBOSOMAL-RNA; CDC GROUP VE-1; SP-NOV; COMB-NOV; DEOXYRIBONUCLEIC-ACID; MASS-SPECTROMETRY; PLANT-GROWTH; PHYLOGENETIC-RELATIONSHIPS; EMENDED DESCRIPTION; CLINICAL SPECIMENS;
D O I
10.1016/j.meegid.2009.08.001
中图分类号
R51 [传染病];
学科分类号
100401 ;
摘要
The genus Pseudomonas was described in 1894 and is one of the most diverse and ubiquitous bacterial genera whose species have been isolated worldwide in all kinds of environments, from the Antarctica to the Tropics, present in sediments, clinical samples, plant, fungi and diseased animal specimens, water, soil, plant rhizosphere, sea, deserts, etc. The taxonomy of the genus has been controversial for years since a lot of bacterial taxa initially included in genus Pseudomonas have been reclassified in other genera or species from a different class of Proteobacteria over the years, as techniques for characterization and classification of microorganisms improved, aiming to set a phylogenetic classification of the species. In this review, the historical evolution of the taxonomy of Pseudomonas is described, and the currently valid criteria and future challenges for taxonomy of the genus and techniques used to achieve the necessary characterization for classifying the species are discussed. Finally, all the validly published Pseudomonas species at present are listed with an overview of their diversity and ecology. (C) 2009 Elsevier B.V. All rights reserved.
引用
收藏
页码:1132 / 1147
页数:16
相关论文
共 210 条
[31]   Towards a conceptual and operational union of bacterial systematics, ecology, and evolution [J].
Cohan, Frederick M. .
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2006, 361 (1475) :1985-1996
[32]  
Cohn F., 1872, BEITR BIOL PFLANZ, V1, P127
[33]   ADANSONIAN ANALYSIS + DEOXYRIBONUCLEIC ACID BASE COMPOSITION OF SOME GRAM-NEGATIVE BACTERIA [J].
COLWELL, RR ;
MANDEL, M .
JOURNAL OF BACTERIOLOGY, 1964, 87 (06) :1412-&
[34]   DEOXYRIBONUCLEIC ACID BASE COMPOSITION AND ADANSONIAN ANALYSIS OF HETEROTROPHIC AEROBIC PSEUDOMONADS [J].
COLWELL, RR ;
CITARELL.RV ;
RYMAN, I .
JOURNAL OF BACTERIOLOGY, 1965, 90 (04) :1148-&
[35]   RECURRENT PSEUDOMONAS-LUTEOLA (CDC GROUP VE-1) PERITONITIS IN A PATIENT UNDERGOING CONTINUOUS AMBULATORY PERITONEAL-DIALYSIS [J].
CONNOR, BJ ;
KOPECKY, RT ;
FRYMOYER, PA ;
FORBES, BA .
JOURNAL OF CLINICAL MICROBIOLOGY, 1987, 25 (06) :1113-1114
[36]   Pseudomonas community structure and antagonistic potential in the rhizosphere:: insights gained by combining phylogenetic and functional gene-based analyses [J].
Costa, Rodrigo ;
Gomes, Newton C. M. ;
Kroegerrecklenfort, Ellen ;
Opelt, Katja ;
Berg, Gabriele ;
Smalla, Kornelia .
ENVIRONMENTAL MICROBIOLOGY, 2007, 9 (09) :2260-2273
[37]   Enhancement of resolution of low molecular weight RNA profiles by staircase electrophoresis [J].
CruzSanchez, JM ;
Velazquez, E ;
Mateos, PF ;
Velazquez, E ;
MartinezMolina, E .
ELECTROPHORESIS, 1997, 18 (11) :1909-1911
[38]   Development of a multilocus sequence typing scheme for the opportunistic pathogen Pseudomonas aeruginosa [J].
Curran, B ;
Jonas, D ;
Grundmann, H ;
Pitt, T ;
Dowson, CG .
JOURNAL OF CLINICAL MICROBIOLOGY, 2004, 42 (12) :5644-5649
[39]   Pseudomonas mosselii sp nov., a novel species isolated from clinical specimens [J].
Dabboussi, F ;
Hamze, M ;
Singer, E ;
Geoffroy, V ;
Meyer, JM ;
Izard, D .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2002, 52 :363-376
[40]   Pseudomonas luteola cutaneous abscess and bacteraemia in a previously healthy man [J].
Dalamaga, M ;
Karmaniolas, K ;
Chavelas, C ;
Liatis, S ;
Matekovits, H ;
Migdalis, I .
SCANDINAVIAN JOURNAL OF INFECTIOUS DISEASES, 2004, 36 (6-7) :495-497