New approaches for functional genomic studies in staphylococci

被引：10

作者：

Beaume, Marie ^{[1
]}

Hernandez, David ^{[1
]}

Francois, Patrice ^{[1
]}

Schrenzel, Jacques ^{[1
]}

机构：

[1] Univ Geneva Hosp HUG, Infect Dis Serv, Genom Res Lab, CH-1211 Geneva 14, Switzerland

来源：

INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY | 2010年 / 300卷 / 2-3期

基金：

瑞士国家科学基金会;

关键词：

Staphylococcus aureus; RT-PCR; SAGE; Microarrays; High-throughput sequencing; RNA-seq; Transcriptomics; NanoString nCounter (TM) assay; GENE-EXPRESSION; GLYCOPEPTIDE-RESISTANCE; EVOLUTIONARY GENOMICS; DNA MICROARRAYS; AUREUS STRAINS; PROBE ARRAYS; VIRULENCE; IDENTIFICATION; SEQUENCE; DISCOVERY;

D O I：

10.1016/j.ijmm.2009.11.001

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

Functional transcriptomics studies have resulted in interesting insights into Staphylococcus aureus diversity and pathogenicity. Here we review the principles, advantages and disadvantages of recent technical developments in the field of transcriptomics and their potential impact on S. aureus research. (C) 2009 Elsevier GmbH. All rights reserved.

引用

页码：88 / 97

页数：10

共 85 条

[11] DNA microarray-based identification of genes associated with glycopeptide resistance in Staphylococcus aureus [J].

Cui, LZ ;

Lian, JQ ;

Neoh, HM ;

Reyes, E ;

Hiramatsu, K .

ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, 2005, 49 (08) :3404-3413

[12] DNA microarrays in drug discovery and development [J].

Debouck, C ;

Goodfellow, PN .

NATURE GENETICS, 1999, 21 (Suppl 1) :48-50

[13] Complete genome sequence of USA300, an epidemic clone of community-acquired meticillin-resistant Staphylococcus aureus [J].

Diep, BA ;

Gill, SR ;

Chang, RF ;

Phan, TH ;

Chen, JH ;

Davidson, MG ;

Lin, F ;

Lin, J ;

Carleton, HA ;

Mongodin, EF ;

Sensabaugh, GF ;

Perdreau-Remington, F .

LANCET, 2006, 367 (9512) :731-739

[14] Transcription profiling-based identification of Staphylococcus aureus genes regulated by the agr and/or sarA loci [J].

Dunman, PM ;

Murphy, E ;

Haney, S ;

Palacios, D ;

Tucker-Kellogg, G ;

Wu, S ;

Brown, EL ;

Zagursky, RJ ;

Shlaes, D ;

Projan, SJ .

JOURNAL OF BACTERIOLOGY, 2001, 183 (24) :7341-7353

[15] The evolutionary history of methicillin-resistant Staphylococcus aureus (MRSA) [J].

Enright, MC ;

Robinson, DA ;

Randle, G ;

Feil, EJ ;

Grundmann, H ;

Spratt, BG .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (11) :7687-7692

[16] Parallel genotyping of human SNPs using generic high-density oligonucleotide tag arrays [J].

Fan, JB ;

Chen, XQ ;

Halushka, MK ;

Berno, A ;

Huang, XH ;

Ryder, T ;

Lipshutz, RJ ;

Lockhart, DJ ;

Chakravarti, A .

GENOME RESEARCH, 2000, 10 (06) :853-860

[17] How clonal is Staphylococcus aureus? [J].

Feil, EJ ;

Cooper, JE ;

Grundmann, H ;

Robinson, DA ;

Enright, MC ;

Berendt, T ;

Peacock, SJ ;

Smith, JM ;

Murphy, M ;

Spratt, BG ;

Moore, CE ;

Day, NPJ .

JOURNAL OF BACTERIOLOGY, 2003, 185 (11) :3307-3316

[18] Evolutionary genomics of Staphylococcus aureus:: Insights into the origin of methicillin-resistant strains and the toxic shock syndrome epidemic [J].

Fitzgerald, JR ;

Sturdevant, DE ;

Mackie, SM ;

Gill, SR ;

Musser, JM .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2001, 98 (15) :8821-8826

[19] Evolutionary genomics of pathogenic bacteria [J].

Fitzgerald, JR ;

Musser, JM .

TRENDS IN MICROBIOLOGY, 2001, 9 (11) :547-553

[20] WHOLE-GENOME RANDOM SEQUENCING AND ASSEMBLY OF HAEMOPHILUS-INFLUENZAE RD [J].

FLEISCHMANN, RD ;

ADAMS, MD ;

WHITE, O ;

CLAYTON, RA ;

KIRKNESS, EF ;

KERLAVAGE, AR ;

BULT, CJ ;

TOMB, JF ;

DOUGHERTY, BA ;

MERRICK, JM ;

MCKENNEY, K ;

SUTTON, G ;

FITZHUGH, W ;

FIELDS, C ;

GOCAYNE, JD ;

SCOTT, J ;

SHIRLEY, R ;

LIU, LI ;

GLODEK, A ;

KELLEY, JM ;

WEIDMAN, JF ;

PHILLIPS, CA ;

SPRIGGS, T ;

HEDBLOM, E ;

COTTON, MD ;

UTTERBACK, TR ;

HANNA, MC ;

NGUYEN, DT ;

SAUDEK, DM ;

BRANDON, RC ;

FINE, LD ;

FRITCHMAN, JL ;

FUHRMANN, JL ;

GEOGHAGEN, NSM ;

GNEHM, CL ;

MCDONALD, LA ;

SMALL, KV ;

FRASER, CM ;

SMITH, HO ;

VENTER, JC .

SCIENCE, 1995, 269 (5223) :496-512

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