Explaining cyclodextrin-mycotoxin interactions using a 'natural' force field

被引:31
作者
Amadasi, Alessio
Dall'Asta, Chiara
Ingletto, Gianluigi
Pela, Roberto
Marchelli, Rosanaela
Cozzini, Pietro [1 ]
机构
[1] Univ Parma, Dept Biochem & Mol Biol, I-43100 Parma, Italy
[2] Univ Parma, Dept Organ & Ind Chem, I-43100 Parma, Italy
[3] Univ Parma, Dept Gen Chem, Mol Modelling Lab, I-43100 Parma, Italy
关键词
HINT; cyclodextrins; docking; scoring functions; mycotoxins;
D O I
10.1016/j.bmc.2007.04.006
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Docking techniques and the HINT (Hydropathic Interaction) program were used to explain interactions of aflatoxin B, and ochratoxin A with beta- and gamma-cyclodextrins. The work was aimed at designing a chemosensor to identify very low concentrations of these mycotoxins by exploiting the affinity of the cyclodextrin cavity for many small organic molecules. Actually, the inclusion of the fluorescent portion of these toxins into the cavity may lower the quenching effect of the solvent, thus enhancing the luminescence. HINT is a 'natural' force field, based on experimentally determined Log Poctanol/water values, that is able to consider both enthalpic and entropic contributions to the binding free energy with an unified approach. HINT is normally applied to predict the AG' of binding for protein-ligand, protein-protein, and protein-DNA interactions. The leading forces in biomolecular processes are the same as those involved in organic host-guest inclusion phenomena, therefore we applied this methodology for the first time to cyclodextrin complexes. The results allowed us to explain spectroscopic data in absence of available crystallographic or NMR structural data. (c) 2007 Elsevier Ltd. All rights reserved.
引用
收藏
页码:4585 / 4594
页数:10
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