The Locus Lookup tool at MaizeGDB: identification of genomic regions in maize by integrating sequence information with physical and genetic maps

被引：67

作者：

Andorf, Carson M. ^{[1
]}

Lawrence, Carolyn J. ^{[1
,2
]}

Harper, Lisa C. ^{[3
,4
]}

Schaeffer, Mary L. ^{[5
,6
]}

Campbell, Darwin A. ^{[1
]}

Sen, Taner Z. ^{[1
,2
]}

机构：

[1] ARS, USDA, Corn Insects & Crop Genet Res Unit, Sacramento, CA USA

[2] Iowa State Univ, Dept Genet Dev & Cell Biol, Bioinformat & Computat Biol Program, Ames, IA 50011 USA

[3] ARS, USDA, Ctr Plant Gene Express, Albany, CA 94710 USA

[4] Univ Calif Berkeley, Dept Mol & Biol, Berkeley, CA 94720 USA

[5] ARS, USDA, Plant Genet Res Unit, Sacramento, CA USA

[6] Univ Missouri, Div Plant Sci, Columbia, MO 65211 USA

来源：

BIOINFORMATICS | 2010年 / 26卷 / 03期

关键词：

D O I：

10.1093/bioinformatics/btp556

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

Methods to automatically integrate sequence information with physical and genetic maps are scarce. The Locus Lookup tool enables researchers to de. ne windows of genomic sequence likely to contain loci of interest where only genetic or physical mapping associations are reported. Using the Locus Lookup tool, researchers will be able to locate specific genes more efficiently that will ultimately help them develop a better maize plant. With the availability of the well-documented source code, the tool can be easily adapted to other biological systems.

引用

页码：434 / 436

页数：3

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