Theoretical studies of metal ion selectivity.: 3.: A theoretical design of the most specific combinations of functional groups representing amino acid side chains for the selected metal ions (Co2+, Ni2+, Cu2+, Zn2+, Cd2+, and Hg2+)

被引:37
作者
Rulisek, L
Havlas, Z
机构
[1] Acad Sci Czech Republ, Inst Organ Chem & Biochem, CR-16610 Prague 6, Czech Republic
[2] Ctr Complex Mol Syst & Biomol, CR-16610 Prague 6, Czech Republic
关键词
D O I
10.1021/jp026951b
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Theoretical efforts to devise the most selective combinations of amino acid (AA) side chains (i.e., metal-binding sites) for six studied metal ions-Co2+, Ni2+, Cu2+, Zn2+, Cd2+, and Hg2+-have been accomplished in this work. Utilizing the results of the preceding two articles of the series, the complexation energies of these ions have been calculated for each combination of simple functional groups representing AA side chains in four coordination geometries (linear, tetrahedral, square planar, and octahedral) according to the approximate formula derived recently. To eliminate the errors of 5-15 kcal mol(-1) inherent in approximate calculations, 10 potential candidates for the most specific site for each ion have been subject to a rigorous quantum chemical investigation. It resulted in the calculations of their complexation energies in 50 different sites and the final assignment of three or four most specific sites for each of them. As the calculated results were obtained by the "gas-phase model chemistry", a part of discussion is devoted to the accuracy and limitations of the above predictions.
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页码:2376 / 2385
页数:10
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共 84 条
[61]   HIGHLY CORRELATED SYSTEMS - EXCITATION-ENERGIES OF 1ST ROW TRANSITION-METALS SC-CU [J].
RAGHAVACHARI, K ;
TRUCKS, GW .
JOURNAL OF CHEMICAL PHYSICS, 1989, 91 (02) :1062-1065
[62]   Bacterial biosensors for monitoring toxic metals [J].
Ramanathan, S ;
Ensor, M ;
Daunert, S .
TRENDS IN BIOTECHNOLOGY, 1997, 15 (12) :500-506
[63]   Structures and fragmentations of zinc(II) complexes of amino acids in the gas phase. III. Rearrangement versus desolvation in the electrospray formation of the glycine-zinc complex [J].
Rogalewicz, F ;
Hoppilliard, Y ;
Ohanessian, G .
INTERNATIONAL JOURNAL OF MASS SPECTROMETRY, 2001, 206 (1-2) :45-52
[64]   Ab initio calculations of monosubstituted (CH3OH, CH3SH, NH3) hydrated ions of Zn2+ and Ni2+ [J].
Rulísek, L ;
Havlas, Z .
JOURNAL OF PHYSICAL CHEMISTRY A, 1999, 103 (11) :1634-1639
[65]   Theoretical studies of metal ion selectivity.: 1.: DFT calculations of interaction energies of amino acid side chains with selected transition metal ions (Co2+, Ni2+, Cu2+, Zn2+, Cd2+, and Hg2+) [J].
Rulísek, L ;
Havlas, Z .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2000, 122 (42) :10428-10439
[66]   Coordination geometries of selected transition metal ions (Co2+, Ni2+, Cu2+, Zn2+, Cd2+, and Hg2+) in metalloproteins [J].
Rulísek, L ;
Vondrásek, J .
JOURNAL OF INORGANIC BIOCHEMISTRY, 1998, 71 (3-4) :115-127
[67]   Theoretical studies of metal ion selectivity.: 2.: DFT calculations of complexation energies of selected transition metal ions (Co2+, Ni2+, Cu2+, Zn2+, Cd2+, and Hg2+) in metal-binding sites of metalloproteins [J].
Rulísek, L ;
Havlas, Z .
JOURNAL OF PHYSICAL CHEMISTRY A, 2002, 106 (15) :3855-3866
[68]  
Rulísek L, 2000, J CHEM PHYS, V112, P149, DOI 10.1063/1.480652
[69]   Carboxylate binding modes in zinc proteins: A theoretical study [J].
Ryde, U .
BIOPHYSICAL JOURNAL, 1999, 77 (05) :2777-2787
[70]   The active-site metal coordination geometry of cadmium-substituted alcohol dehydrogenase - A theoretical interpretation of perturbed angular correlation of gamma-ray measurements [J].
Ryde, U ;
Hemmingsen, L .
JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY, 1997, 2 (05) :567-579