How does a β-hairpin fold/unfold?: Competition between topology and heterogeneity in a solvable model

被引:17
作者
Guo, CL
Levine, H
Kessler, DA
机构
[1] Univ Calif San Diego, Dept Phys, La Jolla, CA 92093 USA
[2] Bar Ilan Univ, Dept Phys, IL-52900 Ramat Gan, Israel
关键词
D O I
10.1073/pnas.190103297
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
We study the competition between topological effects and sequence inhomogeneities in determining the thermodynamics and the un/folding kinetics of a beta-hairpin. Our work utilizes a new exactly solvable model that allows for arbitrary configurations of native contacts. In general, the competition between heterogeneity and topology results in a crossover of the dominant transition state. Interestingly. near this crossover, the single reaction coordinate picture can be seriously misleading. Our results also suggest that inferring the folding pathway from unfolding simulations is not always justified.
引用
收藏
页码:10775 / 10779
页数:5
相关论文
共 15 条
[1]   Prediction of protein-folding mechanisms from free-energy landscapes derived from native structures [J].
Alm, E ;
Baker, D .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1999, 96 (20) :11305-11310
[2]   A theoretical search for folding/unfolding nuclei in three-dimensional protein structures [J].
Galzitskaya, OV ;
Finkelstein, AV .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1999, 96 (20) :11299-11304
[3]   Two state behavior in a solvable model of β-hairpin folding [J].
Guo, CL ;
Levine, H ;
Kessler, DA .
PHYSICAL REVIEW LETTERS, 2000, 84 (15) :3490-3493
[4]   Theory of two-state cooperative folding of proteins [J].
Hao, MH ;
Scheraga, HA .
ACCOUNTS OF CHEMICAL RESEARCH, 1998, 31 (08) :433-440
[5]  
KILONSKI B, 1999, BIOPHYS J, V77, P2942
[6]   Transition state heterogeneity in GCN4 coiled coil folding studied by using multisite mutations and crosslinking [J].
Moran, LB ;
Schneider, JP ;
Kentsis, A ;
Reddy, GA ;
Sosnick, TR .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1999, 96 (19) :10699-10704
[7]   A simple model for calculating the kinetics of protein folding from three-dimensional structures [J].
Muñoz, V ;
Eaton, WA .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1999, 96 (20) :11311-11316
[8]   A statistical mechanical model for β-hairpin kinetics [J].
Muñoz, V ;
Henry, ER ;
Hofrichter, J ;
Eaton, WA .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1998, 95 (11) :5872-5879
[9]   Folding dynamics and mechanism of beta-hairpin formation [J].
Munoz, V ;
Thompson, PA ;
Hofrichter, J ;
Eaton, WA .
NATURE, 1997, 390 (6656) :196-199
[10]   Molecular dynamics simulations of unfolding and refolding of a β-hairpin fragment of protein G [J].
Pande, VS ;
Rokhsar, DS .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1999, 96 (16) :9062-9067