Unveiling the role of network and systems biology in drug discovery

被引:225
作者
Pujol, Albert [1 ,2 ,4 ]
Mosca, Roberto [1 ,4 ]
Farres, Judith [2 ]
Aloy, Patrick [1 ,3 ,4 ]
机构
[1] Inst Res Biomed, Barcelona 08028, Spain
[2] Anax Biotech, Barcelona 08008, Spain
[3] ICREA, Barcelona 08010, Spain
[4] Barcelona Supercomp Ctr, Barcelona 08028, Spain
关键词
SPECTROMETRY-BASED PROTEOMICS; PROTEIN-PROTEIN INTERACTIONS; MAGIC BULLETS; COMBINATION; INNOVATION; DISORDERS; ALIGNMENT; THERAPY; TARGETS; TRAITS;
D O I
10.1016/j.tips.2009.11.006
中图分类号
R9 [药学];
学科分类号
1007 ;
摘要
Network and systems biology offer a novel way of approaching drug discovery by developing models that consider the global physiological environment of protein targets, and the effects of modifying them, without losing the key molecular details. Here we review some recent advances in network and systems biology applied to human health, and discuss how they can have a big impact on some of the most interesting areas of drug discovery. In particular, we claim that network biology will play a central part in the development of novel polypharmacology strategies to fight complex multifactorial diseases, where efficacious therapies will need to center on altering entire pathways rather than single proteins. We briefly present new developments in the two areas where we believe network and system biology strategies are more likely to have an immediate contribution: predictive toxicology and drug repurposing.
引用
收藏
页码:115 / 123
页数:9
相关论文
共 96 条
[21]   Finasteride in the treatment of benign prostatic hypertrophy: an update - New indications for Finasteride therapy [J].
Ekman, P .
SCANDINAVIAN JOURNAL OF UROLOGY AND NEPHROLOGY, 1999, 33 :15-20
[22]   Large-scale mapping of human protein-protein interactions by mass spectrometry [J].
Ewing, Rob M. ;
Chu, Peter ;
Elisma, Fred ;
Li, Hongyan ;
Taylor, Paul ;
Climie, Shane ;
McBroom-Cerajewski, Linda ;
Robinson, Mark D. ;
O'Connor, Liam ;
Li, Michael ;
Taylor, Rod ;
Dharsee, Moyez ;
Ho, Yuen ;
Heilbut, Adrian ;
Moore, Lynda ;
Zhang, Shudong ;
Ornatsky, Olga ;
Bukhman, Yury V. ;
Ethier, Martin ;
Sheng, Yinglun ;
Vasilescu, Julian ;
Abu-Farha, Mohamed ;
Lambert, Jean-Philippe ;
Duewel, Henry S. ;
Stewart, Ian I. ;
Kuehl, Bonnie ;
Hogue, Kelly ;
Colwill, Karen ;
Gladwish, Katharine ;
Muskat, Brenda ;
Kinach, Robert ;
Adams, Sally-Lin ;
Moran, Michael F. ;
Morin, Gregg B. ;
Topaloglou, Thodoros ;
Figeys, Daniel .
MOLECULAR SYSTEMS BIOLOGY, 2007, 3 (1)
[23]   Inferring cellular networks using probabilistic graphical models [J].
Friedman, N .
SCIENCE, 2004, 303 (5659) :799-805
[24]   Proteome survey reveals modularity of the yeast cell machinery [J].
Gavin, AC ;
Aloy, P ;
Grandi, P ;
Krause, R ;
Boesche, M ;
Marzioch, M ;
Rau, C ;
Jensen, LJ ;
Bastuck, S ;
Dümpelfeld, B ;
Edelmann, A ;
Heurtier, MA ;
Hoffman, V ;
Hoefert, C ;
Klein, K ;
Hudak, M ;
Michon, AM ;
Schelder, M ;
Schirle, M ;
Remor, M ;
Rudi, T ;
Hooper, S ;
Bauer, A ;
Bouwmeester, T ;
Casari, G ;
Drewes, G ;
Neubauer, G ;
Rick, JM ;
Kuster, B ;
Bork, P ;
Russell, RB ;
Superti-Furga, G .
NATURE, 2006, 440 (7084) :631-636
[25]  
GILES FJ, 2009, LEUKEMIA
[26]   A ligand-based approach to mining the chemogenomic space of drugs [J].
Gregori-Puigjane, Elisabet ;
Mestres, Jordi .
COMBINATORIAL CHEMISTRY & HIGH THROUGHPUT SCREENING, 2008, 11 (08) :669-676
[27]   Applying mass spectrometry-based proteomics to genetics, genomics and network biology [J].
Gstaiger, Matthias ;
Aebersold, Ruedi .
NATURE REVIEWS GENETICS, 2009, 10 (09) :617-627
[28]   Mediators of vascular remodelling co-opted for sequential steps in lung metastasis [J].
Gupta, Gaorav P. ;
Nguyen, Don X. ;
Chiang, Anne C. ;
Bos, Paula D. ;
Kim, Juliet Y. ;
Nadal, Cristina ;
Gomis, Roger R. ;
Manova-Todorova, Katia ;
Massague, Joan .
NATURE, 2007, 446 (7137) :765-U2
[29]   From molecular to modular cell biology [J].
Hartwell, LH ;
Hopfield, JJ ;
Leibler, S ;
Murray, AW .
NATURE, 1999, 402 (6761) :C47-C52
[30]   A network solution [J].
Henney, Adriano ;
Superti-Furga, Giulio .
NATURE, 2008, 455 (7214) :730-731