The European Bioinformatics Institute's data resources

被引:28
作者
Brooksbank, Catherine [1 ]
Cameron, Graham [1 ]
Thornton, Janet [1 ]
机构
[1] EMBL European Bioinformat Inst, Cambridge CB10 1SD, England
基金
英国惠康基金;
关键词
PROTEIN DATA-BANK; MINIMUM INFORMATION; WEB SERVICES; DATABASES; PROJECT; ARCHIVE; PRIDE;
D O I
10.1093/nar/gkp986
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The wide uptake of next-generation sequencing and other ultra-high throughput technologies by life scientists with a diverse range of interests, spanning fundamental biological research, medicine, agriculture and environmental science, has led to unprecedented growth in the amount of data generated. It has also put the need for unrestricted access to biological data at the centre of biology. The European Bioinformatics Institute (EMBL-EBI) is unique in Europe and is one of only two organisations worldwide providing access to a comprehensive, integrated set of these collections. Here, we describe how the EMBL-EBI's biomolecular databases are evolving to cope with increasing levels of submission, a growing and diversifying user base, and the demand for new types of data. All of the resources described here can be accessed from the EMBL-EBI website: http://www.ebi.ac.uk
引用
收藏
页码:D17 / D25
页数:9
相关论文
共 36 条
  • [1] [Anonymous], 2007, NAT BIOTECHNOL, V25, P262
  • [2] Thou shalt share your data
    不详
    [J]. NATURE METHODS, 2008, 5 (03) : 209 - 209
  • [3] The Universal Protein Resource (UniProt) in 2010
    Apweiler, Rolf
    Martin, Maria Jesus
    O'Donovan, Claire
    Magrane, Michele
    Alam-Faruque, Yasmin
    Antunes, Ricardo
    Barrell, Daniel
    Bely, Benoit
    Bingley, Mark
    Binns, David
    Bower, Lawrence
    Browne, Paul
    Chan, Wei Mun
    Dimmer, Emily
    Eberhardt, Ruth
    Fedotov, Alexander
    Foulger, Rebecca
    Garavelli, John
    Huntley, Rachael
    Jacobsen, Julius
    Kleen, Michael
    Laiho, Kati
    Leinonen, Rasko
    Legge, Duncan
    Lin, Quan
    Liu, Wudong
    Luo, Jie
    Orchard, Sandra
    Patient, Samuel
    Poggioli, Diego
    Pruess, Manuela
    Corbett, Matt
    di Martino, Giuseppe
    Donnelly, Mike
    van Rensburg, Pieter
    Bairoch, Amos
    Bougueleret, Lydie
    Xenarios, Ioannis
    Altairac, Severine
    Auchincloss, Andrea
    Argoud-Puy, Ghislaine
    Axelsen, Kristian
    Baratin, Delphine
    Blatter, Marie-Claude
    Boeckmann, Brigitte
    Bolleman, Jerven
    Bollondi, Laurent
    Boutet, Emmanuel
    Quintaje, Silvia Braconi
    Breuza, Lionel
    [J]. NUCLEIC ACIDS RESEARCH, 2010, 38 : D142 - D148
  • [4] The IntAct molecular interaction database in 2010
    Aranda, B.
    Achuthan, P.
    Alam-Faruque, Y.
    Armean, I.
    Bridge, A.
    Derow, C.
    Feuermann, M.
    Ghanbarian, A. T.
    Kerrien, S.
    Khadake, J.
    Kerssemakers, J.
    Leroy, C.
    Menden, M.
    Michaut, M.
    Montecchi-Palazzi, L.
    Neuhauser, S. N.
    Orchard, S.
    Perreau, V.
    Roechert, B.
    van Eijk, K.
    Hermjakob, H.
    [J]. NUCLEIC ACIDS RESEARCH, 2010, 38 : D525 - D531
  • [5] NCBI GEO: archive for high-throughput functional genomic data
    Barrett, Tanya
    Troup, Dennis B.
    Wilhite, Stephen E.
    Ledoux, Pierre
    Rudnev, Dmitry
    Evangelista, Carlos
    Kim, Irene F.
    Soboleva, Alexandra
    Tomashevsky, Maxim
    Marshall, Kimberly A.
    Phillippy, Katherine H.
    Sherman, Patti M.
    Muertter, Rolf N.
    Edgar, Ron
    [J]. NUCLEIC ACIDS RESEARCH, 2009, 37 : D885 - D890
  • [6] PRIDE Converter: making proteomics data-sharing easy
    Barsnes, Harald
    Vizcaino, Juan Antonio
    Eidhammer, Ingvar
    Martens, Lennart
    [J]. NATURE BIOTECHNOLOGY, 2009, 27 (07) : 598 - 599
  • [7] Accurate whole human genome sequencing using reversible terminator chemistry
    Bentley, David R.
    Balasubramanian, Shankar
    Swerdlow, Harold P.
    Smith, Geoffrey P.
    Milton, John
    Brown, Clive G.
    Hall, Kevin P.
    Evers, Dirk J.
    Barnes, Colin L.
    Bignell, Helen R.
    Boutell, Jonathan M.
    Bryant, Jason
    Carter, Richard J.
    Cheetham, R. Keira
    Cox, Anthony J.
    Ellis, Darren J.
    Flatbush, Michael R.
    Gormley, Niall A.
    Humphray, Sean J.
    Irving, Leslie J.
    Karbelashvili, Mirian S.
    Kirk, Scott M.
    Li, Heng
    Liu, Xiaohai
    Maisinger, Klaus S.
    Murray, Lisa J.
    Obradovic, Bojan
    Ost, Tobias
    Parkinson, Michael L.
    Pratt, Mark R.
    Rasolonjatovo, Isabelle M. J.
    Reed, Mark T.
    Rigatti, Roberto
    Rodighiero, Chiara
    Ross, Mark T.
    Sabot, Andrea
    Sankar, Subramanian V.
    Scally, Aylwyn
    Schroth, Gary P.
    Smith, Mark E.
    Smith, Vincent P.
    Spiridou, Anastassia
    Torrance, Peta E.
    Tzonev, Svilen S.
    Vermaas, Eric H.
    Walter, Klaudia
    Wu, Xiaolin
    Zhang, Lu
    Alam, Mohammed D.
    Anastasi, Carole
    [J]. NATURE, 2008, 456 (7218) : 53 - 59
  • [8] The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data
    Berman, Helen
    Henrick, Kim
    Nakamura, Haruki
    Markley, John L.
    [J]. NUCLEIC ACIDS RESEARCH, 2007, 35 : D301 - D303
  • [9] BEVAN M, 2009, GENOME BIOL, V8, P302
  • [10] Minimum information about a microarray experiment (MIAME) - toward standards for microarray data
    Brazma, A
    Hingamp, P
    Quackenbush, J
    Sherlock, G
    Spellman, P
    Stoeckert, C
    Aach, J
    Ansorge, W
    Ball, CA
    Causton, HC
    Gaasterland, T
    Glenisson, P
    Holstege, FCP
    Kim, IF
    Markowitz, V
    Matese, JC
    Parkinson, H
    Robinson, A
    Sarkans, U
    Schulze-Kremer, S
    Stewart, J
    Taylor, R
    Vilo, J
    Vingron, M
    [J]. NATURE GENETICS, 2001, 29 (04) : 365 - 371