Phylogenetic diversity of gram-positive bacteria cultured from marine sediments

被引:256
作者
Gontang, Erin A. [1 ]
Fenical, William [1 ]
Jensen, Paul R. [1 ]
机构
[1] Univ Calif San Diego, Scripps Institut Oceanog, Ctr Marine Biotechnol & Biomed, La Jolla, CA 92093 USA
关键词
D O I
10.1128/AEM.02811-06
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Major advances in our understanding of marine bacterial diversity have been gained through studies of bacterioplankton, the vast majority of which appear to be gram negative. Less effort has been devoted to studies of bacteria inhabiting marine sediments, yet there is evidence to suggest that gram-positive bacteria comprise a relatively large proportion of these communities. To further expand our understanding of the aerobic gram-positive bacteria present in tropical marine sediments, a culture-dependent approach was applied to sediments collected in the Republic of Palau from the intertidal zone to depths of 500 m. This investigation resulted in the isolation of 1,624 diverse gram-positive bacteria spanning 22 families, including many that appear to represent new taxa. Phylogenetic analysis of 189 representative isolates, based on 16S rRNA gene sequence data, indicated that 124 (65.6%) belonged to the class Actinobacteria while the remaining 65 (34.4%) were members of the class Bacilli. Using a sequence identity value of >= 98%, the 189 isolates grouped into 78 operational taxonomic units, of which 29 (37.2%) are likely to represent new taxa. The high degree of phylogenetic novelty observed during this study highlights the fact that a great deal remains to be learned about the diversity of gram-positive bacteria in marine sediments.
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页码:3272 / 3282
页数:11
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共 72 条
  • [1] [Anonymous], CHRONICA BOT
  • [2] Austin Brian, 1988, MARINE MICROBIOLOGY
  • [3] Bioactive microbial metabolites -: A personal view
    Bérdy, J
    [J]. JOURNAL OF ANTIBIOTICS, 2005, 58 (01) : 1 - 26
  • [4] Bernan V. S, 2004, Current Medicinal Chemistry - Anti-Infective Agents, V3, P181, DOI 10.2174/1568012043353883
  • [5] Marine natural products
    Blunt, JW
    Copp, BR
    Munro, MHG
    Northcote, PT
    Prinsep, MR
    [J]. NATURAL PRODUCT REPORTS, 2006, 23 (01) : 26 - 78
  • [6] Bonde GJ, 1981, AEROBIC ENDOSPORE FO, P181
  • [7] NON-STAINING (KOH) METHOD FOR DETERMINATION OF GRAM REACTIONS OF MARINE-BACTERIA
    BUCK, JD
    [J]. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 1982, 44 (04) : 992 - 993
  • [8] BULL AT, 2004, MICROBIAL DIVERSITY, P13
  • [9] CHAO A, 1984, SCAND J STAT, V11, P265
  • [10] Chazdon RL, 1998, MAN BIOSPH, V20, P285