Lipophilicity in molecular modeling

被引:127
作者
Testa, B
Carrupt, PA
Gaillard, P
Billois, F
Weber, P
机构
[1] Institute of Medicinal Chemistry, School of Pharmacy, University of Lausanne
关键词
lipophilicity; partition coefficients; intermolecular forces; intramolecular interactions; conformation; molecular lipophilicity potential; MLP; 3D-QSAR; comparative molecular field analysis (CoMFA); receptor docking;
D O I
10.1023/A:1016024005429
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Purpose. The molecular lipophilicity potential (MLP) offers a three-dimensional representation of lipophilicity, a molecular property encoding intermolecular recognition forces and intramolecular interactions. Methods. The interest and applications of the MLP in molecular modeling are varied, as illustrated here. Results. The MLP is a major tool to assess the dependence of lipophilicity on conformation. As a matter of fact, the MLP combined with an exploration of the conformational space of a solute reveals its ''chameleonic'' behavior, i.e. its capacity to adapt to its molecular environment by hydrophobic collapse or hydrophilic folding. Another successful application of the MLP is its concatenation into 3D-QSAR (Comparative Molecular Field Analysis, CoMFA). Conclusion. Work is in progress to expand the MLP into a docking tool in the modeling of ligand-receptor interactions.
引用
收藏
页码:335 / 343
页数:9
相关论文
共 42 条
[21]   EFFECT OF INTRAMOLECULAR HYDROPHOBIC BONDING ON PARTITION COEFFICIENTS [J].
HANSCH, C ;
ANDERSON, SM .
JOURNAL OF ORGANIC CHEMISTRY, 1967, 32 (08) :2583-&
[22]  
HANSCH C, 1979, HYDROPHOBIC FRAGMENT
[23]   A NEW APPROACH TO ANALYSIS AND DISPLAY OF LOCAL LIPOPHILICITY HYDROPHILICITY MAPPED ON MOLECULAR-SURFACES [J].
HEIDEN, W ;
MOECKEL, G ;
BRICKMANN, J .
JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN, 1993, 7 (05) :503-514
[24]   LINEAR FREE-ENERGY RELATIONSHIP BETWEEN PARTITION COEFFICIENTS AND BINDING AND CONFORMATIONAL PERTURBATION OF MACROMOLECULES BY SMALL ORGANIC COMPOUNDS [J].
HELMER, F ;
KIEHS, K ;
HANSCH, C .
BIOCHEMISTRY, 1968, 7 (08) :2858-&
[25]  
HIRONO S, 1991, CHEM PHARM BULL, V39, P3106
[27]   ATOM BASED PARAMETRIZATION FOR A CONFORMATIONALLY DEPENDENT HYDROPHOBIC INDEX [J].
KANTOLA, A ;
VILLAR, HO ;
LOEW, GH .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1991, 12 (06) :681-689
[28]   HINT - A NEW METHOD OF EMPIRICAL HYDROPHOBIC FIELD CALCULATION FOR COMFA [J].
KELLOGG, GE ;
SEMUS, SF ;
ABRAHAM, DJ .
JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN, 1991, 5 (06) :545-552
[29]  
KIER LB, 1995, ADV DRUG RES, V26, P1
[30]   ON THE PREDICTION OF BINDING-PROPERTIES OF DRUG MOLECULES BY COMPARATIVE MOLECULAR-FIELD ANALYSIS [J].
KLEBE, G ;
ABRAHAM, U .
JOURNAL OF MEDICINAL CHEMISTRY, 1993, 36 (01) :70-80