TreeSNPs: a laboratory information management system (LIMS) dedicated to SNP discovery in trees

被引：8

作者：

Clement, Sebastien ^{[1
]}

Fillon, Joel ^{[2
]}

Bousquet, Jean ^{[2
]}

Beaulieu, Jean ^{[1
,2
]}

机构：

[1] Nat Resources Canada, Canadian Wood Fibre Ctr, Quebec City, PQ G1V 4C7, Canada

[2] Univ Laval, Arborea & Canada Res Chair Forest & Environm Geno, Quebec City, PQ G1V 0A6, Canada

来源：

TREE GENETICS & GENOMES | 2010年 / 6卷 / 03期

关键词：

SNPs; Databases; Functional genomics; Candidate genes; Molecular markers; Association mapping; WHITE SPRUCE; DATABASE;

D O I：

10.1007/s11295-009-0261-6

中图分类号：

S7 [林业];

学科分类号：

082901 [森林工程];

摘要：

TreeSNPs is a laboratory information management system with a user-friendly Web interface for the gathering and display of data generated through medium- to large-scale single nucleotide polymorphism (SNP) identification by resequencing, in the context of whole genome association, outlier detection, quantitative trait locus, and genetic mapping studies. Its multi-gene approach allows the tracking of all the steps from candidate gene classification and prioritization to SNP discovery. The system, source code, and documentation are available for download at http://treesnps-pub.arborea.ulaval.ca:3000/download. An online demo version can also be accessed from the above link.

引用

页码：435 / 438

页数：4

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