Structure of a mutant EF-G reveals domain III and possibly the fusidic acid binding site

被引:129
作者
Laurberg, M
Kristensen, O
Martemyanov, K
Gudkov, AT
Nagaev, I
Hughes, D
Liljas, A
机构
[1] Univ Lund, Dept Mol Biophys, Ctr Chem & Chem Engn, SE-22100 Lund, Sweden
[2] Russian Acad Sci, Inst Prot Res, Pushchino 142292, Russia
[3] Uppsala Univ, Dept Cell & Mol Biol, BMC, SE-75124 Uppsala, Sweden
关键词
proteins synthesis; elongation factor G; crystal structure; conformational change; fusidic acid resistance;
D O I
10.1006/jmbi.2000.4168
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The crystal structure of Thermus thermophilus elongation factor G (EF-G) carrying the point mutation His573Ala was determined at a resolution of 2.8 Angstrom. The mutant has a more closed structure than that previously reported for wild-type EF-G. This is obtained by a 10 degrees rigid rotation of domains III, TV and V with regard to domains I and II. This rotation results in a displacement of the tip of domain TV by approximately 9 Angstrom. The structure of domain III is now fully visible and reveals the double split beta-alpha-beta motif also observed for EFG domain V and for several ribosomal proteins. A large number of fusidic acid resistant mutations found in domain III have now been possible to locate. Possible locations for the effector loop and a possible binding site for fusidic acid are discussed in relation to some of the fusidic acid resistant mutations. (C) 2000 Academic Press.
引用
收藏
页码:593 / 603
页数:11
相关论文
共 49 条
[1]   Structure of the S15,S18-rRNA complex: Assembly of the 30S ribosome central domain [J].
Agalarov, SC ;
Prasad, GS ;
Funke, PM ;
Stout, CD ;
Williamson, JR .
SCIENCE, 2000, 288 (5463) :107-112
[2]   Effect of buffer conditions on the position of tRNA on the 70 S ribosome as visualized by cryoelectron microscopy [J].
Agrawal, RK ;
Penczek, P ;
Grassucci, RA ;
Burkhardt, N ;
Nierhaus, KH ;
Frank, J .
JOURNAL OF BIOLOGICAL CHEMISTRY, 1999, 274 (13) :8723-8729
[3]   Visualization of elongation factor G on the Escherichia coli 70S ribosome:: The mechanism of translocation [J].
Agrawal, RK ;
Penczek, P ;
Grassucci, RA ;
Frank, J .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1998, 95 (11) :6134-6138
[4]  
Al-Karadaghi S, 2000, RIBOSOME: STRUCTURE, FUNCTION, ANTIBIOTICS, AND CELLULAR INTERACTIONS, P65
[5]   The structure of elongation factor G in complex with GDP: Conformational flexibility and nucleotide exchange [J].
Al-Karadaghi, S ;
AEvarsson, A ;
Garber, M ;
Zheltonosova, J ;
Liljas, A .
STRUCTURE, 1996, 4 (05) :555-565
[6]   Placement of protein and RNA structures into a 5 Å-resolution map of the 50S ribosomal subunit [J].
Ban, N ;
Nissen, P ;
Hansen, J ;
Capel, M ;
Moore, PB ;
Steitz, TA .
NATURE, 1999, 400 (6747) :841-847
[7]   ALSCRIPT - A TOOL TO FORMAT MULTIPLE SEQUENCE ALIGNMENTS [J].
BARTON, GJ .
PROTEIN ENGINEERING, 1993, 6 (01) :37-40
[8]   CRYSTAL-STRUCTURE OF ACTIVE ELONGATION-FACTOR TU REVEALS MAJOR DOMAIN REARRANGEMENTS [J].
BERCHTOLD, H ;
RESHETNIKOVA, L ;
REISER, COA ;
SCHIRMER, NK ;
SPRINZL, M ;
HILGENFELD, R .
NATURE, 1993, 365 (6442) :126-132
[9]   Crystallography & NMR system:: A new software suite for macromolecular structure determination [J].
Brunger, AT ;
Adams, PD ;
Clore, GM ;
DeLano, WL ;
Gros, P ;
Grosse-Kunstleve, RW ;
Jiang, JS ;
Kuszewski, J ;
Nilges, M ;
Pannu, NS ;
Read, RJ ;
Rice, LM ;
Simonson, T ;
Warren, GL .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1998, 54 :905-921
[10]   CONSERVED STRUCTURES AND DIVERSITY OF FUNCTIONS OF RNA-BINDING PROTEINS [J].
BURD, CG ;
DREYFUSS, G .
SCIENCE, 1994, 265 (5172) :615-621