Comparative genomics and understanding of microbial biology

被引:45
作者
Fraser, CM [1 ]
Eisen, J [1 ]
Fleischmann, RD [1 ]
Ketchum, KA [1 ]
Peterson, S [1 ]
机构
[1] Inst Genom Res, Rockville, MD 20850 USA
关键词
D O I
10.3201/eid0605.000510
中图分类号
R392 [医学免疫学]; Q939.91 [免疫学];
学科分类号
100102 ;
摘要
The sequences of close to 30 microbial genomes have been completed during the past 5 years, and the sequences of more than 100 genomes should be completed in the next 2 to 4 years. Soon, completed microbial genome sequences will represent a collection of >200,000 predicted coding sequences. While analysis of a single genome provides tremendous biological insights on any given organism, comparative analysis of multiple genomes provides substantially more information on the physiology and evolution of microbial species and expands our ability to better assign putative function to predicted coding sequences.
引用
收藏
页码:505 / 512
页数:8
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共 44 条
  • [1] Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori
    Alm, RA
    Ling, LSL
    Moir, DT
    King, BL
    Brown, ED
    Doig, PC
    Smith, DR
    Noonan, B
    Guild, BC
    deJonge, BL
    Carmel, G
    Tummino, PJ
    Caruso, A
    Uria-Nickelsen, M
    Mills, DM
    Ives, C
    Gibson, R
    Merberg, D
    Mills, SD
    Jiang, Q
    Taylor, DE
    Vovis, GF
    Trost, TJ
    [J]. NATURE, 1999, 397 (6715) : 176 - 180
  • [2] The genome sequence of Rickettsia prowazekii and the origin of mitochondria
    Andersson, SGE
    Zomorodipour, A
    Andersson, JO
    Sicheritz-Pontén, T
    Alsmark, UCM
    Podowski, RM
    Näslund, AK
    Eriksson, AS
    Winkler, HH
    Kurland, CG
    [J]. NATURE, 1998, 396 (6707) : 133 - 140
  • [3] The complete genome sequence of Escherichia coli K-12
    Blattner, FR
    Plunkett, G
    Bloch, CA
    Perna, NT
    Burland, V
    Riley, M
    ColladoVides, J
    Glasner, JD
    Rode, CK
    Mayhew, GF
    Gregor, J
    Davis, NW
    Kirkpatrick, HA
    Goeden, MA
    Rose, DJ
    Mau, B
    Shao, Y
    [J]. SCIENCE, 1997, 277 (5331) : 1453 - +
  • [4] The complete nucleotide sequence of chromosome 3 of Plasmodium falciparum
    Bowman, S
    Lawson, D
    Basham, D
    Brown, D
    Chillingworth, T
    Churcher, CM
    Craig, A
    Davies, RM
    Devlin, K
    Feltwell, T
    Gentles, S
    Gwilliam, R
    Hamlin, N
    Harris, D
    Holroyd, S
    Hornsby, T
    Horrocks, P
    Jagels, K
    Jassal, B
    Kyes, S
    McLean, J
    Moule, S
    Mungall, K
    Murphy, L
    Oliver, K
    Quail, MA
    Rajandream, MA
    Rutter, S
    Skelton, J
    Squares, R
    Squares, S
    Sulston, JE
    Whitehead, S
    Woodward, JR
    Newbold, C
    Barrell, BG
    [J]. NATURE, 1999, 400 (6744) : 532 - 538
  • [5] Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii
    Bult, CJ
    White, O
    Olsen, GJ
    Zhou, LX
    Fleischmann, RD
    Sutton, GG
    Blake, JA
    FitzGerald, LM
    Clayton, RA
    Gocayne, JD
    Kerlavage, AR
    Dougherty, BA
    Tomb, JF
    Adams, MD
    Reich, CI
    Overbeek, R
    Kirkness, EF
    Weinstock, KG
    Merrick, JM
    Glodek, A
    Scott, JL
    Geoghagen, NSM
    Weidman, JF
    Fuhrmann, JL
    Nguyen, D
    Utterback, TR
    Kelley, JM
    Peterson, JD
    Sadow, PW
    Hanna, MC
    Cotton, MD
    Roberts, KM
    Hurst, MA
    Kaine, BP
    Borodovsky, M
    Klenk, HP
    Fraser, CM
    Smith, HO
    Woese, CR
    Venter, JC
    [J]. SCIENCE, 1996, 273 (5278) : 1058 - 1073
  • [6] A bacterial genome in flux:: the twelve linear and nine circular extrachromosomal DNAs in an infectious isolate of the Lyme disease spirochete Borrelia burgdorferi
    Casjens, S
    Palmer, N
    van Vugt, R
    Huang, WM
    Stevenson, B
    Rosa, P
    Lathigra, R
    Sutton, G
    Peterson, J
    Dodson, RJ
    Haft, D
    Hickey, E
    Gwinn, M
    White, O
    Fraser, CM
    [J]. MOLECULAR MICROBIOLOGY, 2000, 35 (03) : 490 - 516
  • [7] Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence
    Cole, ST
    Brosch, R
    Parkhill, J
    Garnier, T
    Churcher, C
    Harris, D
    Gordon, SV
    Eiglmeier, K
    Gas, S
    Barry, CE
    Tekaia, F
    Badcock, K
    Basham, D
    Brown, D
    Chillingworth, T
    Connor, R
    Davies, R
    Devlin, K
    Feltwell, T
    Gentles, S
    Hamlin, N
    Holroyd, S
    Hornby, T
    Jagels, K
    Krogh, A
    McLean, J
    Moule, S
    Murphy, L
    Oliver, K
    Osborne, J
    Quail, MA
    Rajandream, MA
    Rogers, J
    Rutter, S
    Seeger, K
    Skelton, J
    Squares, R
    Squares, S
    Sulston, JE
    Taylor, K
    Whitehead, S
    Barrell, BG
    [J]. NATURE, 1998, 393 (6685) : 537 - +
  • [8] The complete genome of the hyperthermophilic bacterium Aquifex aeolicus
    Deckert, G
    Warren, PV
    Gaasterland, T
    Young, WG
    Lenox, AL
    Graham, DE
    Overbeek, R
    Snead, MA
    Keller, M
    Aujay, M
    Huber, R
    Feldman, RA
    Short, JM
    Olsen, GJ
    Swanson, RV
    [J]. NATURE, 1998, 392 (6674) : 353 - 358
  • [9] A phylogenomic study of DNA repair genes, proteins, and processes
    Eisen, JA
    Hanawalt, PC
    [J]. MUTATION RESEARCH-DNA REPAIR, 1999, 435 (03): : 171 - 213
  • [10] Phylogenomics: Improving functional predictions for uncharacterized genes by evolutionary analysis
    Eisen, JA
    [J]. GENOME RESEARCH, 1998, 8 (03): : 163 - 167