Comparative genomics and understanding of microbial biology

被引:45
作者
Fraser, CM [1 ]
Eisen, J [1 ]
Fleischmann, RD [1 ]
Ketchum, KA [1 ]
Peterson, S [1 ]
机构
[1] Inst Genom Res, Rockville, MD 20850 USA
关键词
D O I
10.3201/eid0605.000510
中图分类号
R392 [医学免疫学]; Q939.91 [免疫学];
学科分类号
100102 ;
摘要
The sequences of close to 30 microbial genomes have been completed during the past 5 years, and the sequences of more than 100 genomes should be completed in the next 2 to 4 years. Soon, completed microbial genome sequences will represent a collection of >200,000 predicted coding sequences. While analysis of a single genome provides tremendous biological insights on any given organism, comparative analysis of multiple genomes provides substantially more information on the physiology and evolution of microbial species and expands our ability to better assign putative function to predicted coding sequences.
引用
收藏
页码:505 / 512
页数:8
相关论文
共 44 条
  • [21] Comparative genomes of Chlamydia pneumoniae and C-trachomatis
    Kalman, S
    Mitchell, W
    Marathe, R
    Lammel, C
    Fan, L
    Hyman, RW
    Olinger, L
    Grimwood, L
    Davis, RW
    Stephens, RS
    [J]. NATURE GENETICS, 1999, 21 (04) : 385 - 389
  • [22] Kaneko T, 1996, DNA Res, V3, P109
  • [23] Kawarabayasi Y, 1999, DNA Res, V6, P83, DOI 10.1093/dnares/6.2.83
  • [24] Kawarabayasi Y, 1998, DNA Res, V5, P55, DOI 10.1093/dnares/5.2.55
  • [25] The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus
    Klenk, HP
    Clayton, RA
    Tomb, JF
    White, O
    Nelson, KE
    Ketchum, KA
    Dodson, RJ
    Gwinn, M
    Hickey, EK
    Peterson, JD
    Richardson, DL
    Kerlavage, AR
    Graham, DE
    Kyrpides, NC
    Fleischmann, RD
    Quackenbush, J
    Lee, NH
    Sutton, GG
    Gill, S
    Kirkness, EF
    Dougherty, BA
    McKenney, K
    Adams, MD
    Loftus, B
    Peterson, S
    Reich, CI
    McNeil, LK
    Badger, JH
    Glodek, A
    Zhou, LX
    Overbeek, R
    Gocayne, JD
    Weidman, JF
    McDonald, L
    Utterback, T
    Cotton, MD
    Spriggs, T
    Artiach, P
    Kaine, BP
    Sykes, SM
    Sadow, PW
    DAndrea, KP
    Bowman, C
    Fujii, C
    Garland, SA
    Mason, TM
    Olsen, GJ
    Fraser, CM
    Smith, HO
    Woese, CR
    [J]. NATURE, 1997, 390 (6658) : 364 - &
  • [26] The complete genome sequence of the Gram-positive bacterium Bacillus subtilis
    Kunst, F
    Ogasawara, N
    Moszer, I
    Albertini, AM
    Alloni, G
    Azevedo, V
    Bertero, MG
    Bessieres, P
    Bolotin, A
    Borchert, S
    Borriss, R
    Boursier, L
    Brans, A
    Braun, M
    Brignell, SC
    Bron, S
    Brouillet, S
    Bruschi, CV
    Caldwell, B
    Capuano, V
    Carter, NM
    Choi, SK
    Codani, JJ
    Connerton, IF
    Cummings, NJ
    Daniel, RA
    Denizot, F
    Devine, KM
    Dusterhoft, A
    Ehrlich, SD
    Emmerson, PT
    Entian, KD
    Errington, J
    Fabret, C
    Ferrari, E
    Foulger, D
    Fritz, C
    Fujita, M
    Fujita, Y
    Fuma, S
    Galizzi, A
    Galleron, N
    Ghim, SY
    Glaser, P
    Goffeau, A
    Golightly, EJ
    Grandi, G
    Guiseppi, G
    Guy, BJ
    Haga, K
    [J]. NATURE, 1997, 390 (6657) : 249 - 256
  • [27] Molecular archaeology of the Escherichia coli genome
    Lawrence, JG
    Ochman, H
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1998, 95 (16) : 9413 - 9417
  • [28] Manca C, 1999, J IMMUNOL, V162, P6740
  • [29] Leishmania major Friedlin chromosome 1 has an unusual distribution of protein-coding genes
    Myler, PJ
    Audleman, L
    DeVos, T
    Hixson, G
    Kiser, P
    Lemley, C
    Magness, C
    Rickel, E
    Sisk, E
    Sunkin, S
    Swartzell, S
    Westlake, T
    Bastien, P
    Fu, GL
    Ivens, A
    Stuart, K
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1999, 96 (06) : 2902 - 2906
  • [30] Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima
    Nelson, KE
    Clayton, RA
    Gill, SR
    Gwinn, ML
    Dodson, RJ
    Haft, DH
    Hickey, EK
    Peterson, LD
    Nelson, WC
    Ketchum, KA
    McDonald, L
    Utterback, TR
    Malek, JA
    Linher, KD
    Garrett, MM
    Stewart, AM
    Cotton, MD
    Pratt, MS
    Phillips, CA
    Richardson, D
    Heidelberg, J
    Sutton, GG
    Fleischmann, RD
    Eisen, JA
    White, O
    Salzberg, SL
    Smith, HO
    Venter, JC
    Fraser, CM
    [J]. NATURE, 1999, 399 (6734) : 323 - 329