Synergy Between Expert and Machine-Learning Approaches Allows for Improved Retrosynthetic Planning

被引:59
作者
Badowski, Tomasz [1 ]
Gajewska, Ewa P. [1 ]
Molga, Karol [1 ]
Grzybowski, Bartosz A. [1 ,2 ,3 ]
机构
[1] Polish Acad Sci, Inst Organ Chem, Ul Kasprzaka 44-52, PL-01224 Warsaw, Poland
[2] UNIST, IBS Ctr Soft & Living Matter, 50 UNIST Gil, Ulsan, South Korea
[3] UNIST, Dept Chem, 50 UNIST Gil, Ulsan, South Korea
关键词
artificial intelligence; computer-aided retrosynthesis; expert systems; neural networks; COMPUTER; DESIGN;
D O I
10.1002/anie.201912083
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
When computers plan multistep syntheses, they can rely either on expert knowledge or information machine-extracted from large reaction repositories. Both approaches suffer from imperfect functions evaluating reaction choices: expert functions are heuristics based on chemical intuition, whereas machine learning (ML) relies on neural networks (NNs) that can make meaningful predictions only about popular reaction types. This paper shows that expert and ML approaches can be synergistic-specifically, when NNs are trained on literature data matched onto high-quality, expert-coded reaction rules, they achieve higher synthetic accuracy than either of the methods alone and, importantly, can also handle rare/specialized reaction types.
引用
收藏
页码:725 / 730
页数:6
相关论文
共 26 条
  • [1] Selection of cost-effective yet chemically diverse pathways from the networks of computer-generated retrosynthetic plans
    Badowski, Tomasz
    Molga, Karol
    Grzybowski, Bartosz A.
    [J]. CHEMICAL SCIENCE, 2019, 10 (17) : 4640 - 4651
  • [2] Enhancing Retrosynthetic Reaction Prediction with Deep Learning Using Multiscale Reaction Classification
    Baylon, Javier L.
    Cilfone, Nicholas A.
    Gulcher, Jeffrey R.
    Chittenden, Thomas W.
    [J]. JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2019, 59 (02) : 673 - 688
  • [3] Route Design in the 21st Century: The ICSYNTH Software Tool as an Idea Generator for Synthesis Prediction
    Bogevig, Anders
    Federsel, Hans-Juergen
    Huerta, Fernando
    Hutchings, Michael G.
    Kraut, Hans
    Langer, Thomas
    Loew, Peter
    Oppawsky, Christoph
    Rein, Tobias
    Saller, Heinz
    [J]. ORGANIC PROCESS RESEARCH & DEVELOPMENT, 2015, 19 (02) : 357 - 368
  • [4] Mining Electronic Laboratory Notebooks: Analysis, Retrosynthesis, and Reaction Based Enumeration
    Christ, Clara D.
    Zentgraf, Matthias
    Kriegl, Jan M.
    [J]. JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2012, 52 (07) : 1745 - 1756
  • [5] A robotic platform for flow synthesis of organic compounds informed by AI planning
    Coley, Connor W.
    Thomas, Dale A., III
    Lummiss, Justin A. M.
    Jaworski, Jonathan N.
    Breen, Christopher P.
    Schultz, Victor
    Hart, Travis
    Fishman, Joshua S.
    Rogers, Luke
    Gao, Hanyu
    Hicklin, Robert W.
    Plehiers, Pieter P.
    Byington, Joshua
    Piotti, John S.
    Green, William H.
    Hart, A. John
    Jamison, Timothy F.
    Jensen, Klavs F.
    [J]. SCIENCE, 2019, 365 (6453) : 557 - +
  • [6] RDChiral: An RDKit Wrapper for Handling Stereochemistry in Retrosynthetic Template Extraction and Application
    Coley, Connor W.
    Green, William H.
    Jensen, Klays F.
    [J]. JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2019, 59 (06) : 2529 - 2537
  • [7] Machine Learning in Computer-Aided Synthesis Planning
    Coley, Connor W.
    Green, William H.
    Jensen, Klays F.
    [J]. ACCOUNTS OF CHEMICAL RESEARCH, 2018, 51 (05) : 1281 - 1289
  • [8] COMPUTER-ASSISTED DESIGN OF COMPLEX ORGANIC SYNTHESES
    COREY, EJ
    WIPKE, WT
    [J]. SCIENCE, 1969, 166 (3902) : 178 - &
  • [9] GRZYBOWSKI B, 2018, ABSTR PAP AM CHEM S, V256
  • [10] Hastie T., 2009, The Elements of Statistical Learning: Data Mining, Inference,and Prediction, P485