Modelling protein unfolding: hen egg-white lysozyme

被引:65
作者
Williams, MA
Thornton, JM
Goodfellow, JM
机构
[1] UNIV LONDON BIRKBECK COLL,DEPT CRYSTALLOG,MOL BIOL LAB,LONDON WC1E 7HX,ENGLAND
[2] UNIV LONDON UNIV COLL,DEPT BIOCHEM & MOL BIOL,BIOMOL STRUCT & MODELLING UNIT,LONDON WC1E 6BT,ENGLAND
来源
PROTEIN ENGINEERING | 1997年 / 10卷 / 08期
关键词
folding intermediate; hen lysozyme; molecular modelling; molten globule;
D O I
10.1093/protein/10.8.895
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
A novel modelling procedure, which rapidly unfolds a protein by enhancing solvent penetration of its core, was used to investigate the unfolding pathway of hen egg-white lysozyme, Early on the unfolding pathway there is a dramatic disruption of the tertiary contacts within the protein, which decouples its domains. Subsequently, the helical domain slowly loses its compactness and the helices fluctuate rapidly, The protein then adopts a 'molten globule-like' structure in which the native beta-sheet is essentially intact, The modelled structures have properties similar to those of lysozyme's experimentally characterized partially folded states and provide insight into its complex (un)folding process, The sequence of unfolding events shows how the unfolding pathway of a multidomain protein may be most similar to its fastest, but not necessarily its dominant, folding pathway.
引用
收藏
页码:895 / 903
页数:9
相关论文
共 45 条
[1]   STRUCTURE AND DYNAMICS OF THE ACID-DENATURED MOLTEN GLOBULE STATE OF ALPHA-LACTALBUMIN - A 2-DIMENSIONAL NMR-STUDY [J].
ALEXANDRESCU, AT ;
EVANS, PA ;
PITKEATHLY, M ;
BAUM, J ;
DOBSON, CM .
BIOCHEMISTRY, 1993, 32 (07) :1707-1718
[2]   AN EVALUATION OF IMPLICIT AND EXPLICIT SOLVENT MODEL SYSTEMS FOR THE MOLECULAR-DYNAMICS SIMULATION OF BACTERIOPHAGE-T4 LYSOZYME [J].
ARNOLD, GE ;
ORNSTEIN, RL .
PROTEINS-STRUCTURE FUNCTION AND GENETICS, 1994, 18 (01) :19-33
[3]   PULSED H/D-EXCHANGE STUDIES OF FOLDING INTERMEDIATES [J].
BALDWIN, RL .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 1993, 3 (01) :84-91
[4]   MOLECULAR-DYNAMICS WITH COUPLING TO AN EXTERNAL BATH [J].
BERENDSEN, HJC ;
POSTMA, JPM ;
VANGUNSTEREN, WF ;
DINOLA, A ;
HAAK, JR .
JOURNAL OF CHEMICAL PHYSICS, 1984, 81 (08) :3684-3690
[5]   MOLECULAR-DYNAMICS SIMULATION OF PROTEIN DENATURATION - SOLVATION OF THE HYDROPHOBIC CORES AND SECONDARY STRUCTURE OF BARNASE [J].
CAFLISCH, A ;
KARPLUS, M .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1994, 91 (05) :1746-1750
[6]   KINETIC RESOLUTION OF PEPTIDE-BOND AND SIDE-CHAIN FAR-UV CIRCULAR-DICHROISM DURING THE FOLDING OF HEN EGG-WHITE LYSOZYME [J].
CHAFFOTTE, AF ;
GUILLOU, Y ;
GOLDBERG, ME .
BIOCHEMISTRY, 1992, 31 (40) :9694-9702
[7]   STRUCTURE AND STABILITY OF THE MOLTEN GLOBULE STATE OF GUINEA-PIG ALPHA-LACTALBUMIN - A HYDROGEN-EXCHANGE STUDY [J].
CHYAN, CL ;
WORMALD, C ;
DOBSON, CM ;
EVANS, PA ;
BAUM, J .
BIOCHEMISTRY, 1993, 32 (21) :5681-5691
[8]   A MODEL OF THE MOLTEN GLOBULE STATE FROM MOLECULAR-DYNAMICS SIMULATIONS [J].
DAGGETT, V ;
LEVITT, M .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1992, 89 (11) :5142-5146
[9]   PROTEIN FOLDING[--]UNFOLDING DYNAMICS [J].
DAGGETT, V ;
LEVITT, M .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 1994, 4 (02) :291-295
[10]   PROTEIN UNFOLDING PATHWAYS EXPLORED THROUGH MOLECULAR-DYNAMICS SIMULATIONS [J].
DAGGETT, V ;
LEVITT, M .
JOURNAL OF MOLECULAR BIOLOGY, 1993, 232 (02) :600-619