Towards automated Laue data processing: application to the choice of optimal X-ray spectrum

被引:23
作者
Bourgeois, D
Wagner, U
Wulff, M
机构
[1] European Synchrotron Radiat Facil, F-38043 Grenoble, France
[2] IBS, UPR 9015, LCCP, F-38027 Grenoble 1, France
[3] Karl Franzens Univ Graz, Inst Chem, Abt Strukturbiol, A-8010 Graz, Austria
来源
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY | 2000年 / 56卷
关键词
D O I
10.1107/S0907444900006958
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Laue data reduction has now reached a level of sophistication that allows nearly automated processing to be performed. The software described enables complete reduction of the data with essentially no user intervention, making Laue processing almost as straightforward as monochromatic data processing. Interactive work is limited to the indexing of only one Laue pattern. More importantly, it is shown that the data quality is substantially enhanced when soft-limited predictions are used. Further improvement obtained by taking advantage of the structure-factor amplitudes from a known closely related structure is described. To determine the most suitable type of insertion device to be used for time-resolved Laue crystallography, the technique described was applied to Laue data sets collected from photoactive yellow protein under identical conditions but with three different insertion devices: a wiggler, a broad-bandpass undulator and a single-line undulator. Although the optimal choice may ultimately be dictated by sample parameters (such as mosaic spread) and by the type of experiment (repeatable or non-repeatable reactions), the results here show that the use of single-line undulators will generally yield by far the best compromise between data quality, acquisition time and radiation damage.
引用
收藏
页码:973 / 985
页数:13
相关论文
共 36 条
[1]   LSCALE -: the new normalization, scaling and absorption correction program in the Daresbury Laue software suite [J].
Arzt, S ;
Campbell, JW ;
Harding, MM ;
Hao, Q ;
Helliwell, JR .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1999, 32 :554-562
[2]   THE CCP4 SUITE - PROGRAMS FOR PROTEIN CRYSTALLOGRAPHY [J].
BAILEY, S .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1994, 50 :760-763
[3]   1.4 ANGSTROM STRUCTURE OF PHOTOACTIVE YELLOW PROTEIN, A CYTOSOLIC PHOTORECEPTOR - UNUSUAL FOLD, ACTIVE-SITE, AND CHROMOPHORE [J].
BORGSTAHL, GEO ;
WILLIAMS, DR ;
GETZOFF, ED .
BIOCHEMISTRY, 1995, 34 (19) :6278-6287
[4]   A Bayesian approach to Laue diffraction analysis and its potential for time-resolved protein crystallography [J].
Bourenkov, GP ;
Popov, AN ;
Bartunik, HD .
ACTA CRYSTALLOGRAPHICA SECTION A, 1996, 52 :797-811
[5]   New processing tools for weak and/or spatially overlapped macromolecular diffraction patterns [J].
Bourgeois, D .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1999, 55 :1733-1741
[6]   An integration routine based on profile fitting with optimized fitting area for the evaluation of weak and/or overlapped two-dimensional Laue or monochromatic patterns [J].
Bourgeois, D ;
Nurizzo, D ;
Kahn, R ;
Cambillau, C .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1998, 31 :22-35
[7]   Feasibility and realization of single-pulse laue diffraction on macromolecular crystals at ESRF [J].
Bourgeois, D ;
Ursby, T ;
Wulff, M ;
Pradervand, C ;
Legrand, A ;
Schildkamp, W ;
Laboure, S ;
Srajer, V ;
Teng, TY ;
Roth, M ;
Moffat, K .
JOURNAL OF SYNCHROTRON RADIATION, 1996, 3 :65-74
[8]   FREE R-VALUE - A NOVEL STATISTICAL QUANTITY FOR ASSESSING THE ACCURACY OF CRYSTAL-STRUCTURES [J].
BRUNGER, AT .
NATURE, 1992, 355 (6359) :472-475
[9]   Crystallography & NMR system:: A new software suite for macromolecular structure determination [J].
Brunger, AT ;
Adams, PD ;
Clore, GM ;
DeLano, WL ;
Gros, P ;
Grosse-Kunstleve, RW ;
Jiang, JS ;
Kuszewski, J ;
Nilges, M ;
Pannu, NS ;
Read, RJ ;
Rice, LM ;
Simonson, T ;
Warren, GL .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1998, 54 :905-921
[10]   EVALUATION OF REFLECTION INTENSITIES FOR THE COMPONENTS OF MULTIPLE LAUE DIFFRACTION SPOTS .2. USING THE WAVELENGTH-NORMALIZATION CURVE [J].
CAMPBELL, JW ;
HAO, Q .
ACTA CRYSTALLOGRAPHICA SECTION A, 1993, 49 :889-893