Identification of Hydroxyl Protons, Determination of Their Exchange Dynamics, and Characterization of Hydrogen Bonding in a Microcrystallin Protein

被引:33
作者
Agarwal, Vipin [1 ]
Linser, Rasmus [1 ]
Fink, Uwe [1 ]
Faelber, Katja [1 ]
Reif, Bernd [1 ,2 ]
机构
[1] Leibniz Forschungsinst Mol Pharmakol FMP, D-13125 Berlin, Germany
[2] Charite, D-10115 Berlin, Germany
关键词
SOLID-STATE NMR; SENSITIVITY ENHANCEMENT; CORRELATION SPECTROSCOPY; DISTANCE MEASUREMENTS; WATER-MOLECULES; CHEMICAL-SHIFTS; SH3; DOMAIN; H-BOND; ACID; RELAXATION;
D O I
10.1021/ja910167q
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Heteronuclear correlation experiments employing perdeuterated proteins enable the observation of all hydroxyl protons in a microcrystalline protein by MAS solid-state NMR. Dipolar-based sequences allow magnetization transfers that are >50 times faster compared to scalar-coupling-based sequences, which significantly facilitates their assignment. Hydroxyl exchange rates were measured using EXSY-type experiments. We find a biexponential decay behavior for those hydroxyl groups that are involved in side chain-side chain C-O-H center dot center dot center dot O=C hydrogen bonds. The quantification of the distances between the hydroxyl proton and the carbon atoms in the hydrogen-bonding donor as well as acceptor group is achieved via a REDOR experiment. In combination with X-ray data and isotropic proton chemical shifts, availability of H-1, C-13 distance information can aid in the quantitative description of the geometry of these hydrogen bonds. Similarly, correlations between backbone amide proton and carbonyl atoms are observed, which will be useful in the analysis of the registry of beta-strand arrangement in annyloid fibrils.
引用
收藏
页码:3187 / 3195
页数:9
相关论文
共 74 条
[1]   Residual methyl protonation in perdeuterated proteins for multi-dimensional correlation experiments in MAS solid-state NMR spectroscopy [J].
Agarwal, Vipin ;
Reif, Bernd .
JOURNAL OF MAGNETIC RESONANCE, 2008, 194 (01) :16-24
[2]   High resolution 1H detected 1H,13C correlation spectra in MAS solid-state NMR using deuterated proteins with selective 1H,2H isotopic labeling of methyl groups [J].
Agarwal, Vipin ;
Diehl, Anne ;
Skrynnikov, Nikolai ;
Reif, Bernd .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2006, 128 (39) :12620-12621
[3]   Protein Side-Chain Dynamics As Observed by Solution- and Solid-State NMR Spectroscopy: A Similarity Revealed [J].
Agarwal, Vipin ;
Xue, Yi ;
Reif, Bernd ;
Skrynnikov, Nikolai R. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2008, 130 (49) :16611-16621
[4]   Optimum levels of exchangeable protons in perdeuterated proteins for proton detection in MAS solid-state NMR spectroscopy [J].
Akbey, Uemit ;
Lange, Sascha ;
Franks, W. Trent ;
Linser, Rasmus ;
Rehbein, Kristina ;
Diehl, Anne ;
van Rossum, Barth-Jan ;
Reif, Bernd ;
Oschkinat, Hartmut .
JOURNAL OF BIOMOLECULAR NMR, 2010, 46 (01) :67-73
[5]   Unusual 1H NMR chemical shifts support (His) Cε1-H••• O=C H-bond:: Proposal for reaction-driven ring flip mechanism in serine protease catalysis [J].
Ash, EL ;
Sudmeier, JL ;
Day, RM ;
Vincent, M ;
Torchilin, EV ;
Haddad, KC ;
Bradshaw, EM ;
Sanford, DG ;
Bachovchin, WW .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2000, 97 (19) :10371-10376
[6]   SIMPSON: A general simulation program for solid-state NMR spectroscopy [J].
Bak, M ;
Rasmussen, JT ;
Nielsen, NC .
JOURNAL OF MAGNETIC RESONANCE, 2000, 147 (02) :296-330
[7]   H-1 AND C-13 ASSIGNMENTS FROM SENSITIVITY-ENHANCED DETECTION OF HETERONUCLEAR MULTIPLE-BOND CONNECTIVITY BY 2D MULTIPLE QUANTUM NMR [J].
BAX, A ;
SUMMERS, MF .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1986, 108 (08) :2093-2094
[8]   Neutron crystallography: opportunities, challenges, and limitations [J].
Blakeley, Matthew P. ;
Langan, Paul ;
Niimura, Nobuo ;
Podjarny, Alberto .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 2008, 18 (05) :593-600
[9]   Water-protein hydrogen exchange in the micro-crystalline protein Crh as observed by solid state NMR spectroscopy [J].
Böckmann, A ;
Juy, M ;
Bettler, E ;
Emsley, L ;
Galinier, A ;
Penin, F ;
Lesage, A .
JOURNAL OF BIOMOLECULAR NMR, 2005, 32 (03) :195-207
[10]   Characterization of different water pools in solid-state NMR protein samples [J].
Boeckmann, Anja ;
Gardiennet, Carole ;
Verel, Rene ;
Hunkeler, Andreas ;
Loquet, Antoine ;
Pintacuda, Guido ;
Emsley, Lyndon ;
Meier, Beat H. ;
Lesage, Anne .
JOURNAL OF BIOMOLECULAR NMR, 2009, 45 (03) :319-327