Identification of Hydroxyl Protons, Determination of Their Exchange Dynamics, and Characterization of Hydrogen Bonding in a Microcrystallin Protein

被引:33
作者
Agarwal, Vipin [1 ]
Linser, Rasmus [1 ]
Fink, Uwe [1 ]
Faelber, Katja [1 ]
Reif, Bernd [1 ,2 ]
机构
[1] Leibniz Forschungsinst Mol Pharmakol FMP, D-13125 Berlin, Germany
[2] Charite, D-10115 Berlin, Germany
关键词
SOLID-STATE NMR; SENSITIVITY ENHANCEMENT; CORRELATION SPECTROSCOPY; DISTANCE MEASUREMENTS; WATER-MOLECULES; CHEMICAL-SHIFTS; SH3; DOMAIN; H-BOND; ACID; RELAXATION;
D O I
10.1021/ja910167q
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Heteronuclear correlation experiments employing perdeuterated proteins enable the observation of all hydroxyl protons in a microcrystalline protein by MAS solid-state NMR. Dipolar-based sequences allow magnetization transfers that are >50 times faster compared to scalar-coupling-based sequences, which significantly facilitates their assignment. Hydroxyl exchange rates were measured using EXSY-type experiments. We find a biexponential decay behavior for those hydroxyl groups that are involved in side chain-side chain C-O-H center dot center dot center dot O=C hydrogen bonds. The quantification of the distances between the hydroxyl proton and the carbon atoms in the hydrogen-bonding donor as well as acceptor group is achieved via a REDOR experiment. In combination with X-ray data and isotropic proton chemical shifts, availability of H-1, C-13 distance information can aid in the quantitative description of the geometry of these hydrogen bonds. Similarly, correlations between backbone amide proton and carbonyl atoms are observed, which will be useful in the analysis of the registry of beta-strand arrangement in annyloid fibrils.
引用
收藏
页码:3187 / 3195
页数:9
相关论文
共 74 条
[21]   Accurate Determination of Order Parameters from 1H,15N Dipolar Couplings in MAS Solid-State NMR Experiments [J].
Chevelkov, Veniamin ;
Fink, Uwe ;
Reif, Bernd .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2009, 131 (39) :14018-14022
[22]   Quantitative analysis of backbone motion in proteins using MAS solid-state NMR spectroscopy [J].
Chevelkov, Veniamin ;
Fink, Uwe ;
Reif, Bernd .
JOURNAL OF BIOMOLECULAR NMR, 2009, 45 (1-2) :197-206
[23]   Direct observation of hydrogen bonds in proteins by interresidue 3hJNC′ scalar couplings [J].
Cordier, F ;
Grzesiek, S .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1999, 121 (07) :1601-1602
[24]   Identification of the hydrogen bonding network in a protein by scalar couplings [J].
Cornilescu, G ;
Hu, JS ;
Bax, A .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1999, 121 (12) :2949-2950
[25]   Direct observation of hydrogen bonds in nucleic acid base pairs by internucleotide 2JNN couplings [J].
Dingley, AJ ;
Grzesiek, S .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1998, 120 (33) :8293-8297
[27]   A HETERONUCLEAR CORRELATION EXPERIMENT FOR SIMULTANEOUS DETERMINATION OF N-15 LONGITUDINAL DECAY AND CHEMICAL-EXCHANGE RATES OF SYSTEMS IN SLOW EQUILIBRIUM [J].
FARROW, NA ;
ZHANG, OW ;
FORMANKAY, JD ;
KAY, LE .
JOURNAL OF BIOMOLECULAR NMR, 1994, 4 (05) :727-734
[28]   PRECISION NEUTRON-DIFFRACTION STRUCTURE DETERMINATION OF PROTEIN AND NUCLEIC-ACID COMPONENTS .11. MOLECULAR CONFIGURATION AND HYDROGEN-BONDING OF SERINE IN CRYSTALLINE AMINO-ACIDS L-SERINE MONOHYDRATE AND DL-SERINE [J].
FREY, MN ;
LEHMANN, MS ;
KOETZLE, TF ;
HAMILTON, WC .
ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE, 1973, B 29 (APR15) :876-884
[29]   Subangstrom crystallography reveals that short ionic hydrogen bonds, and not a His-Asp low-barrier hydrogen bond, stabilize the transition state in serine protease catalysis [J].
Fuhrmann, Cynthia N. ;
Daugherty, Matthew D. ;
Agard, David A. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2006, 128 (28) :9086-9102
[30]   Microsecond exchange of internal water molecules in bacteriorhodopsin [J].
Gottschalk, M ;
Dencher, NA ;
Halle, B .
JOURNAL OF MOLECULAR BIOLOGY, 2001, 311 (03) :605-621