Computing in macromolecular crystallography using a parallel architecture

被引:13
作者
Diederichs, K [1 ]
机构
[1] Univ Konstanz, Fachbereich Biol, Naturwissensch Sekt, D-78457 Constance, Germany
关键词
D O I
10.1107/S002188980000697X
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Despite advances in computer technology, computing in macromolecular crystallography keeps pace in its demand for CPU power. Improvements in CPU speed, together with advances in computing methods that depend on it, often translate into the possibility to solve structures that would otherwise require additional experiments. Programs for data reduction, molecular-replacement programs employing multidimensional searches on a grid in real, Patterson or reciprocal space, and phasing and refinement programs, currently have, among others, the highest requirements for CPU power. For these and other programs, speed-up of calculations as a result of parallel execution on multiprocessor computers is possible. This paper outlines the use of the OpenMP programming interface and reports its successful application for parallelization of ESSENS [Kleywegt & Jones (1997). Acta Cryst. D53, 179-185] and SHELXL [Schneider & Sheldrick (1997). Methods Enzymol. 277, 319-343]. Parallel computing, which is possible as a result of the inherent parallelism of crystallographic algorithms, extends the range of problems in macromolecular crystallography that programs can be applied to and can significantly reduce the time required for progressing from a data set to a refined model.
引用
收藏
页码:1154 / 1161
页数:8
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