Calculation of partial specific volumes and other volumetric properties of small molecules and polymers

被引:48
作者
Durchschlag, H [1 ]
Zipper, P
机构
[1] Univ Regensburg, Inst Biophys & Phys Biochem, D-93040 Regensburg, Germany
[2] Graz Univ, Inst Phys Chem, A-8010 Graz, Austria
来源
JOURNAL OF APPLIED CRYSTALLOGRAPHY | 1997年 / 30卷 / 02期
关键词
D O I
10.1107/S0021889897003348
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Volumetric properties of macromolecules and low-molecular compounds are necessary auxiliary means for the determination of molar masses from solution-scattering and hydrodynamic techniques. In many cases experimental determinations of partial volumes can or have to be replaced by calculative procedures. A universal approach for the calculation of both low-molecular organic compounds and polymers of different chemical composition and structure in aqueous solution is described. It is based on volume increments for the constituent atoms, ions and/or groups and allows corrections for covolume, ring formation, micellization, ionization etc. Application of this approach is of particular interest in connection with: (i) nonionic and ionic organic solutes; (ii) inorganic electrolytes; (iii) monomeric and micellar detergents and lipids; (iv) carbohydrates and polysaccharides; (v) nucleobases, nucleosides, nucleotides, polynucleotides, nucleic acids; (vi) amino acids, amino-acid residues, peptides, polyaminoacids, nonconjugated and conjugated proteins; (vii) synthetic polymers. The results of the volume predictions show a high degree of reliability, if compared to experimental data. Special approaches dealing with simple and conjugated proteins and protein-ligand complexes in two-and multicomponent solutions allow the prediction of both isomolal and isopotential volumes under a variety of native and denaturing conditions, including the presence of high amounts of additives.
引用
收藏
页码:803 / 807
页数:5
相关论文
共 37 条
[2]  
ARAKAWA T, 1985, METHOD ENZYMOL, V117, P60
[3]   MECHANISM OF PROTEIN SALTING IN AND SALTING OUT BY DIVALENT-CATION SALTS - BALANCE BETWEEN HYDRATION AND SALT BINDING [J].
ARAKAWA, T ;
TIMASHEFF, SN .
BIOCHEMISTRY, 1984, 23 (25) :5912-5923
[4]   PREFERENTIAL INTERACTIONS OF PROTEINS WITH SALTS IN CONCENTRATED-SOLUTIONS [J].
ARAKAWA, T ;
TIMASHEFF, SN .
BIOCHEMISTRY, 1982, 21 (25) :6545-6552
[5]   BIOPHYSICAL STUDY OF HALOPHILIC MALATE-DEHYDROGENASE IN SOLUTION - REVISED SUBUNIT STRUCTURE AND SOLVENT INTERACTIONS OF NATIVE AND RECOMBINANT ENZYME [J].
BONNETE, F ;
EBEL, C ;
ZACCAI, G ;
EISENBERG, H .
JOURNAL OF THE CHEMICAL SOCIETY-FARADAY TRANSACTIONS, 1993, 89 (15) :2659-2666
[6]   THERMODYNAMIC ANALYSIS OF MULTICOMPONENT SOLUTIONS [J].
CASASSA, EF ;
EISENBERG, H .
ADVANCES IN PROTEIN CHEMISTRY, 1964, 19 :287-395
[7]  
Cohn E. J., 1943, PROTEINS
[8]  
DURCHSCHLAG H, 1994, PROG COLL POL SCI S, V94, P20
[9]   DETERMINATION OF THE PARTIAL SPECIFIC VOLUME OF CONJUGATED PROTEINS [J].
DURCHSCHLAG, H .
COLLOID AND POLYMER SCIENCE, 1989, 267 (12) :1139-1150
[10]  
DURCHSCHLAG H, 1988, BIOCH LIFE SCI ADV, V7, P181