Searching databases to find protein domain organization

被引:17
作者
Bateman, A
Birney, E
机构
来源
ADVANCES IN PROTEIN CHEMISTRY, VOL 54: ANALYSIS OF AMINO ACID SEQUENCES | 2000年 / 54卷
关键词
D O I
10.1016/S0065-3233(00)54005-4
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
引用
收藏
页码:137 / 157
页数:21
相关论文
共 56 条
[1]   Gapped BLAST and PSI-BLAST: a new generation of protein database search programs [J].
Altschul, SF ;
Madden, TL ;
Schaffer, AA ;
Zhang, JH ;
Zhang, Z ;
Miller, W ;
Lipman, DJ .
NUCLEIC ACIDS RESEARCH, 1997, 25 (17) :3389-3402
[2]  
ALTSCHUL SF, 1990, J MOL BIOL, V215, P403, DOI 10.1006/jmbi.1990.9999
[3]   PRINTS prepares for the new millennium [J].
Attwood, TK ;
Flower, DR ;
Lewis, AP ;
Mabey, JE ;
Morgan, SR ;
Scordis, P ;
Selley, JN ;
Wright, W .
NUCLEIC ACIDS RESEARCH, 1999, 27 (01) :220-225
[4]   SKP1 connects cell cycle regulators to the ubiquitin proteolysis machinery through a novel motif, the F-box [J].
Bai, C ;
Sen, P ;
Hofmann, K ;
Ma, L ;
Goebl, M ;
Harper, JW ;
Elledge, SJ .
CELL, 1996, 86 (02) :263-274
[5]   The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999 [J].
Bairoch, A ;
Apweiler, R .
NUCLEIC ACIDS RESEARCH, 1999, 27 (01) :49-54
[6]   The PIR-International Protein Sequence Database [J].
Barker, WC ;
Garavelli, JS ;
McGarvey, PB ;
Marzec, CR ;
Orcutt, BC ;
Srinivasarao, GY ;
Yeh, LSL ;
Ledley, RS ;
Mewes, HW ;
Pfeiffer, F ;
Tsugita, A ;
Wu, C .
NUCLEIC ACIDS RESEARCH, 1999, 27 (01) :39-43
[7]   Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins [J].
Bateman, A ;
Birney, E ;
Durbin, R ;
Eddy, SR ;
Finn, RD ;
Sonnhammer, ELL .
NUCLEIC ACIDS RESEARCH, 1999, 27 (01) :260-262
[8]   PREDICTING COILED COILS BY USE SF PAIRWISE RESIDUE CORRELATIONS [J].
BERGER, B ;
WILSON, DB ;
WOLF, E ;
TONCHEV, T ;
MILLA, M ;
KIM, PS .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1995, 92 (18) :8259-8263
[9]   PROTEIN DATA BANK - COMPUTER-BASED ARCHIVAL FILE FOR MACROMOLECULAR STRUCTURES [J].
BERNSTEIN, FC ;
KOETZLE, TF ;
WILLIAMS, GJB ;
MEYER, EF ;
BRICE, MD ;
RODGERS, JR ;
KENNARD, O ;
SHIMANOUCHI, T ;
TASUMI, M .
JOURNAL OF MOLECULAR BIOLOGY, 1977, 112 (03) :535-542
[10]   Cytoplasmic signalling domains: the next generation [J].
Bork, P ;
Schultz, J ;
Ponting, CP .
TRENDS IN BIOCHEMICAL SCIENCES, 1997, 22 (08) :296-298