The mouse gene expression database GXD

被引：21

作者：

Ringwald, M ^{[1
]}

Davis, GL ^{[1
]}

Smith, AG ^{[1
]}

Trepanier, LE ^{[1
]}

Begley, DA ^{[1
]}

Richardson, JE ^{[1
]}

Eppig, JT ^{[1
]}

机构：

[1] Jackson Lab, Bar Harbor, ME 04609 USA

来源：

SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY | 1997年 / 8卷 / 05期

基金：

美国国家卫生研究院;

关键词：

bioinformatics; database; development; gene expression; mouse;

D O I：

10.1006/scdb.1997.0177

中图分类号：

Q2 [细胞生物学];

学科分类号：

071009 ; 090102 ;

摘要：

The gene expression database (GXD) is being developed to store and integrate expression information for mouse development. GXD addresses many issues that apply to gene expression databases in general, and its data structures and supporting software tools are generalized in design and thus readily adaptable to other life stages and species. integration of GXD With the mouse genome database (MGD) and interconnections with other relevant databases will place the gene expression data into the larger biological and analytical context. Here, we describe the design and implementation of GXD and illustrate, in particular the gene expression annotator, an electronic system for submitting expression data to the database. (C) 1997 Academic Press Ltd.

引用

页码：489 / 497

页数：9

共 18 条

[1]

[Anonymous], AM TYPE CULTURE COLL

[2] The SWISS-PROT protein sequence data bank and its supplement TrEMBL [J].

Bairoch, A ;

Apweller, R .

NUCLEIC ACIDS RESEARCH, 1997, 25 (01) :31-36

[3] GenBank [J].

Benson, Dennis A. ;

Karsch-Mizrachi, Ilene ;

Lipman, David J. ;

Ostell, James ;

Sayers, Eric W. .

NUCLEIC ACIDS RESEARCH, 2011, 39 :D32-D37

[4] The Mouse Genome Database (MGD), a comprehensive public resource of genetic, phenotypic and genomic data [J].

Blake, JA ;

Richardson, JE ;

Davisson, MT ;

Eppig, JT ;

Battles, J ;

Begley, D ;

Blackburn, R ;

Bradt, D ;

Colby, G ;

Corbani, L ;

Davis, G ;

Doolittle, D ;

Drake, T ;

Frazer, K ;

Gilbert, J ;

Grant, P ;

LennonPierce, M ;

Maltais, L ;

May, M ;

McIntire, M ;

Merriam, J ;

Ormsby, J ;

Palazola, R ;

Ringwald, M ;

Rockwood, S ;

Sharpe, S ;

Shaw, D ;

Reed, D ;

StanleyWalls, M ;

Taylor, L .

NUCLEIC ACIDS RESEARCH, 1997, 25 (01) :85-91

[5] The Protein Information Resource (PIR) and the PIR-International Protein Sequence Database [J].

George, DG ;

Dodson, RJ ;

Garavelli, JS ;

Haft, DH ;

Hunt, LT ;

Marzec, CR ;

Orcutt, BC ;

Sidman, KE ;

Srinivasarao, GY ;

Yeh, LSL ;

Arminski, LM ;

Ledley, RS ;

Tsugita, A ;

Barker, WC .

NUCLEIC ACIDS RESEARCH, 1997, 25 (01) :24-27

[6] The Genome Sequence DataBase version 1.0 (GSDB): From low pass sequences to complete genomes [J].

Harger, C ;

Skupski, M ;

Allen, E ;

Clark, C ;

Crowley, D ;

Dickinson, E ;

Easley, D ;

EspinosaLujan, A ;

Farmer, A ;

Fields, C ;

Flores, L ;

Harris, L ;

Kenn, G ;

Manning, M ;

McLeod, M ;

ONeill, J ;

Pumilia, M ;

Reinert, R ;

Rider, D ;

Rohrlich, J ;

Romero, Y ;

Schwertfeger, J ;

Seluja, G ;

Siepel, A ;

Singh, G ;

Smyth, L ;

Stamper, D ;

Stein, J ;

Suggs, R ;

Takkallapalli, R ;

Thayer, N ;

Thompson, G ;

Walsh, C ;

Wedgeworth, F ;

Schad, PA .

NUCLEIC ACIDS RESEARCH, 1997, 25 (01) :18-23

[7] The IMAGE consortium: An integrated molecular analysis of genomes and their expression [J].

Lennon, G ;

Auffray, C ;

Polymeropoulos, M ;

Soares, MB .

GENOMICS, 1996, 33 (01) :151-152

[8] Expression monitoring by hybridization to high-density oligonucleotide arrays [J].

Lockhart, DJ ;

Dong, HL ;

Byrne, MC ;

Follettie, MT ;

Gallo, MV ;

Chee, MS ;

Mittmann, M ;

Wang, CW ;

Kobayashi, M ;

Horton, H ;

Brown, EL .

NATURE BIOTECHNOLOGY, 1996, 14 (13) :1675-1680

[9] DIFFERENTIAL GENE-EXPRESSION IN THE MURINE THYMUS ASSAYED BY QUANTITATIVE HYBRIDIZATION OF ARRAYED CDNA CLONES [J].

NGUYEN, C ;

ROCHA, D ;

GRANJEAUD, S ;

BALDIT, M ;

BERNARD, K ;

NAQUET, P ;

JORDAN, BR .

GENOMICS, 1995, 29 (01) :207-216

[10] Novel gene transcripts preferentially expressed in human muscles revealed by quantitative hybridization of a high density cDNA array [J].

Pietu, G ;

Alibert, O ;

Guichard, V ;

Lamy, B ;

Bois, F ;

Leroy, E ;

MariageSamson, R ;

Houlgatte, R ;

Soularue, P ;

Auffray, C .

GENOME RESEARCH, 1996, 6 (06) :492-503

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