How many genes are there in plants (. . . and why are they there)?

被引:82
作者
Sterck, Lieven [1 ]
Rombauts, Stephane [1 ]
Vandepoele, Klaas [1 ]
Rouze, Pierre [2 ]
Van de Peer, Yves [1 ]
机构
[1] Univ Ghent VIB, Flanders Interuniv Inst Biotechnol, Dept Plant Syst Biol, Technologie Pk 927, B-9052 Ghent, Belgium
[2] Univ Ghent VIB, INRA, Lab Assoc, B-9052 Ghent, Belgium
关键词
D O I
10.1016/j.pbi.2007.01.004
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
Annotation of the first few complete plant genomes has revealed that plants have many genes. For Arabidopsis, over 26 500 gene loci have been predicted, whereas for rice, the number adds up to 41 000. Recent analysis of the poplar genome suggests more than 45 000 genes, and partial sequence data from Medicago and Lotus also suggest that these plants contain more than 40 000 genes. Nevertheless, estimations suggest that ancestral angiosperms had no more than 12 000-14 000 genes. One explanation for the large increase in gene number during angiosperm evolution is gene duplication. It has been shown previously that the retention of duplicates following small- and large-scale duplication events in plants is substantial. Taking into account the function of genes that have been duplicated, we are now beginning to understand why many plant genes might have been retained, and how their retention might be linked to the typical lifestyle of plants.
引用
收藏
页码:199 / 203
页数:5
相关论文
共 41 条
[1]   JIGSAW: integration of multiple sources of evidence for gene prediction [J].
Allen, JE ;
Salzberg, SL .
BIOINFORMATICS, 2005, 21 (18) :3596-3603
[2]   Assaying gene content in Arabidopsis [J].
Allen, KD .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (14) :9568-9572
[3]   Consistent over-estimation of gene number in complex plant genomes [J].
Bennetzen, JL ;
Coleman, C ;
Liu, RY ;
Ma, JX ;
Ramakrishna, W .
CURRENT OPINION IN PLANT BIOLOGY, 2004, 7 (06) :732-736
[4]   Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution [J].
Blanc, G ;
Wolfe, KH .
PLANT CELL, 2004, 16 (07) :1679-1691
[5]   A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome [J].
Blanc, G ;
Hokamp, K ;
Wolfe, KH .
GENOME RESEARCH, 2003, 13 (02) :137-144
[6]   Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events [J].
Bowers, JE ;
Chapman, BA ;
Rong, JK ;
Paterson, AH .
NATURE, 2003, 422 (6930) :433-438
[7]   Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomes [J].
Cannon, Steven B. ;
Sterck, Lieven ;
Rombauts, Stephane ;
Sato, Shusei ;
Cheung, Foo ;
Gouzy, Jerome ;
Wang, Xiaohong ;
Mudge, Joann ;
Vasdewani, Jayprakash ;
Scheix, Thomas ;
Spannagl, Manuel ;
Monaghan, Erin ;
Nicholson, Christine ;
Humphray, Sean J. ;
Schoof, Heiko ;
Mayer, Klaus F. X. ;
Rogers, Jane ;
Quetier, Francis ;
Oldroyd, Giles E. ;
Debelle, Frederic ;
Cook, Douglas R. ;
Retzel, Ernest F. ;
Roe, Bruce A. ;
Town, Christopher D. ;
Tabata, Satoshi ;
Van de Peer, Yves ;
Young, Nevin D. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (40) :14959-14964
[8]   Nonrandom divergence of gene expression following gene and genome duplications in the flowering plant Arabidopsis thaliana [J].
Casneuf, T ;
De Bodt, S ;
Raes, J ;
Maere, S ;
Van de Peer, Y .
GENOME BIOLOGY, 2006, 7 (02)
[9]   Widespread genome duplications throughout the history of flowering plants [J].
Cui, Liying ;
Wall, P. Kerr ;
Leebens-Mack, James H. ;
Lindsay, Bruce G. ;
Soltis, Douglas E. ;
Doyle, Jeff J. ;
Soltis, Pamela S. ;
Carlson, John E. ;
Arumuganathan, Kathiravetpilla ;
Barakat, Abdelali ;
Albert, Victor A. ;
Ma, Hong ;
dePamphilis, Claude W. .
GENOME RESEARCH, 2006, 16 (06) :738-749
[10]   Genome duplication and the origin of angiosperms [J].
De Bodt, S ;
Maere, S ;
Van de Peer, Y .
TRENDS IN ECOLOGY & EVOLUTION, 2005, 20 (11) :591-597