Hawkeye: an interactive visual analytics tool for genome assemblies

被引：55

作者：

Schatz, Michael C.

Phillippy, Adam M.

Shneiderman, Ben

Salzberg, Steven L.

机构：

[1] Univ Maryland, Ctr Bioinformat & Computat Biol, College Pk, MD 20742 USA

[2] Univ Maryland, Dept Comp Sci, College Pk, MD 20742 USA

[3] Univ Maryland, Human Comp Interact Lab, College Pk, MD 20742 USA

来源：

GENOME BIOLOGY | 2007年 / 8卷 / 03期

关键词：

D O I：

10.1186/gb-2007-8-3-r34

中图分类号：

Q81 [生物工程学（生物技术）]; Q93 [微生物学];

学科分类号：

071005 ; 0836 ; 090102 ; 100705 ;

摘要：

Genome sequencing remains an inexact science, and genome sequences can contain significant errors if they are not carefully examined. Hawkeye is our new visual analytics tool for genome assemblies, designed to aid in identifying and correcting assembly errors. Users can analyze all levels of an assembly along with summary statistics and assembly metrics, and are guided by a ranking component towards likely mis-assemblies. Hawkeye is freely available and released as part of the open source AMOS project http://amos.sourceforge.net/hawkeye.

引用

页数：12

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