Is allostery an intrinsic property of all dynamic proteins?

被引:757
作者
Gunasekaran, K
Ma, BY
Nussinov, R
机构
[1] SAIC Frederick Inc, Basic Res Program, Lab Expt & Computat Biol, NCI, Ft Detrick, MD 21702 USA
[2] Tel Aviv Univ, Sackler Sch Med, Dept Human Genet, Sackler Inst Mol Med, Tel Aviv, Israel
关键词
allostery; conformational ensembles; allosteric transition; drug discovery; population redistribution; energy landscape; function;
D O I
10.1002/prot.20232
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 [生物化学与分子生物学]; 081704 [应用化学];
摘要
Allostery involves coupling of conformational changes between two widely separated binding sites. The common view holds that allosteric proteins are symmetric oligomers, with each subunit existing in "at least" two conformational states with a different affinity for ligands. Recent observations such as the allosteric behavior of myoglobin, a classical example of a nonallosteric protein, call into question the existing allosteric dogma. Here we argue that all (nonfibrous) proteins are potentially allosteric. Allostery is a consequence of re-distributions of protein conformational ensembles. In a nonallosteric protein, the binding site shape may not show a concerted second-site change and enzyme kinetics may not reflect an allosteric transition. Nevertheless, appropriate ligands, point mutations, or external conditions may facilitate a population shift, leading a presumably nonallosteric protein to behave allosterically. In principle, practically any potential drug binding to the protein surface can alter the conformational. redistribution. The question is its effectiveness in the redistribution of the ensemble, affecting the protein binding sites and its function. Here, we review experimental observations validating this view of protein allostery. (C) 2004 Wiley-Liss, Inc.
引用
收藏
页码:433 / 443
页数:11
相关论文
共 98 条
[1]
Alberts B., 1994, MOL BIOL CELL
[2]
PROTEIN-FOLDING INTERMEDIATES - NATIVE-STATE HYDROGEN-EXCHANGE [J].
BAI, YW ;
SOSNICK, TR ;
MAYNE, L ;
ENGLANDER, SW .
SCIENCE, 1995, 269 (5221) :192-197
[3]
Barbar EJ, 2002, BIOPHYS J, V82, p350A
[4]
The Lac repressor: a second generation of structural and functional studies [J].
Bell, CE ;
Lewis, M .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 2001, 11 (01) :19-25
[5]
Antigen recognition by conformational selection [J].
Berger, C ;
Weber-Bornhauser, S ;
Eggenberger, J ;
Hanes, J ;
Plückthun, A ;
Bosshard, HR .
FEBS LETTERS, 1999, 450 (1-2) :149-153
[6]
THE CRYSTAL-STRUCTURE OF THE BACTERIAL CHAPERONIN GROEL AT 2.8-ANGSTROM [J].
BRAIG, K ;
OTWINOWSKI, Z ;
HEGDE, R ;
BOISVERT, DC ;
JOACHIMIAK, A ;
HORWICH, AL ;
SIGLER, PB .
NATURE, 1994, 371 (6498) :578-586
[7]
Cantor C. R., 1980, BIOPHYSICAL CHEM 3
[8]
Carlson HA, 2000, MOL PHARMACOL, V57, P213
[9]
Allosteric binding sites on cell-surface receptors: Novel targets for drug discovery [J].
Christopoulos, A .
NATURE REVIEWS DRUG DISCOVERY, 2002, 1 (03) :198-210
[10]
Convergent solutions to binding at a protein-protein interface [J].
DeLano, WL ;
Ultsch, MH ;
de Vos, AM ;
Wells, JA .
SCIENCE, 2000, 287 (5456) :1279-1283