Foldamers as reactive sieves: Reactivity as a probe of conformational flexibility

被引:66
作者
Smaldone, Ronald A.
Moore, Jeffrey S. [1 ]
机构
[1] Univ Illinois, Dept Chem, Urbana, IL 61801 USA
[2] Univ Illinois, Dept Mat Sci & Engn, Urbana, IL 61801 USA
[3] Univ Illinois, Beckman Inst Adv Sci & Technol, Urbana, IL 61801 USA
关键词
D O I
10.1021/ja067670a
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
A series of m-phenyleneethynylene (mPE) oligomers modified with a dimethylaminopyridine (DMAP) unit were treated with methyl sulfonates of varying sizes and shapes, and the relative reactivities were measured by UV spectrophotometry. Using a small-molecule DMAP analogue as a reference, each of the methyl sulfonates was shown to react at nearly identical rate. In great contrast, oligomers that are long enough to fold, and hence capable of binding the methyl sulfonate, experience rate enhancements of 18-1600-fold relative to that of the small-molecule analogue, depending on the type of alkyl chain attached to the guest. Three different oligomer lengths were studied, with the longest oligomers exhibiting the fastest rate and greatest substrate specificity. Even large, bulky guests show slightly enhanced methylation rates compared to that with the reference DMAP, which suggests a dynamic nature to the oligomer's binding cavity. Several mechanistic models to describe this behavior are discussed.
引用
收藏
页码:5444 / 5450
页数:7
相关论文
共 39 条
[1]   The dynamic energy landscape of dihydrofolate reductase catalysis [J].
Boehr, David D. ;
McElheny, Dan ;
Dyson, H. Jane ;
Wright, Peter E. .
SCIENCE, 2006, 313 (5793) :1638-1642
[2]   A perspective on biological catalysis [J].
Cannon, WR ;
Singleton, SF ;
Benkovic, SJ .
NATURE STRUCTURAL BIOLOGY, 1996, 3 (10) :821-833
[3]  
Denmark SE, 2005, ANGEW CHEM INT EDIT, V44, P4682, DOI 10.1002/anie.200462338
[4]   Folding directed N-oxidation of oligopyridine-dicarboxamide strands and hybridization of oxidized oligomers [J].
Dolain, C ;
Zhan, CL ;
Léger, JM ;
Daniels, L ;
Huc, I .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2005, 127 (08) :2400-2401
[5]   Solid-phase synthesis of m-phenylene ethynylene heterosequence oligomers [J].
Elliott, Erin L. ;
Ray, Christian R. ;
Kraft, Stefan ;
Atkins, Joseph R. ;
Moore, Jeffrey S. .
JOURNAL OF ORGANIC CHEMISTRY, 2006, 71 (14) :5282-5290
[6]  
Fersht A, 1977, ENZYME STRUCTURE MEC
[7]   Research: Protein structure - Sieves in sequence [J].
Fersht, AR .
SCIENCE, 1998, 280 (5363) :541-541
[8]   Specific ion pairing and interfacial hydration as controlling factors in gemini micelle morphology. Chemical trapping studies [J].
Geng, Y ;
Romsted, LS ;
Menger, F .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2006, 128 (02) :492-501
[9]   Enhanced methylation rate within a foldable molecular receptor [J].
Heemstra, JM ;
Moore, JS .
JOURNAL OF ORGANIC CHEMISTRY, 2004, 69 (26) :9234-9237
[10]   Folding-promoted methylation of a helical DMAP analogue [J].
Heemstra, JM ;
Moore, JS .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2004, 126 (06) :1648-1649