Members of a novel gene family, Gsdm, are expressed exclusively in the epithelium of the skin and gastrointestinal tract in a highly tissue-specific manner

被引:265
作者
Tamura, Masaru
Tanaka, Shigekazu
Fujii, Tomoaki
Aoki, Aya
Komiyama, Hiromitu
Ezawa, Kiyoshi
Sumiyama, Kenta
Sagai, Tomoko
Shiroishi, Toshibiko
机构
[1] Natl Inst Genet, Genet Strains Res Ctr, Mammalian Genet Lab, Mishima, Shizuoka 4110845, Japan
[2] Grad Univ Adv Studies, Sch Life Sci, Dept Genet, Mishima, Shizuoka 4110845, Japan
[3] Juntendo Univ, Shizuoka Hosp, Sch Med, Dept Neurosurg, Shizuoka 4102295, Japan
[4] Juntendo Univ, Sch Med, Dept Coloproctol Surg, Bunkyo Ku, Tokyo 1138421, Japan
[5] Natl Inst Genet, Div Populat Genet, Mishima, Shizuoka 4110845, Japan
关键词
Gsdm family; Dfna5; Dfnb59 (pejvakin); gastrointestinal tract; epithelium; gene duplication; evolution;
D O I
10.1016/j.ygeno.2007.01.003
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Gasdermin (Gsdm) was originally identified as a candidate causative gene for several mouse skin mutants. Several Gsdm-related genes sharing a protein domain with DFNA5, the causative gene of human nonsyndromic hearing loss, have been found in the mouse and human genomes, and this group is referred to as the DFNA5-Gasdermin domain family. However, our current comparative genomic analysis identified several novel motifs distinct from the previously reported domain in the Gsdm-related genes. We also identified three new Gsdm genes clustered on mouse chromosome 15. We named these genes collectively the Gsdm family. Extensive expression analysis revealed exclusive expression of Gsdm family genes in the epithelium of the skin and gastrointestinal tract in a highly tissue-specific manner. Further database searching revealed the presence of other related genes with a similar N-terminal motif. These results suggest that the Gsdm family and related genes have evolved divergent epithelial expression profiles. (c) 2007 Elsevier Inc. All rights reserved.
引用
收藏
页码:618 / 629
页数:12
相关论文
共 39 条
[31]   CLUSTAL-W - IMPROVING THE SENSITIVITY OF PROGRESSIVE MULTIPLE SEQUENCE ALIGNMENT THROUGH SEQUENCE WEIGHTING, POSITION-SPECIFIC GAP PENALTIES AND WEIGHT MATRIX CHOICE [J].
THOMPSON, JD ;
HIGGINS, DG ;
GIBSON, TJ .
NUCLEIC ACIDS RESEARCH, 1994, 22 (22) :4673-4680
[32]  
Van Laer L, 1998, NAT GENET, V20, P194
[33]  
Wagner A, 1998, BIOESSAYS, V20, P785, DOI 10.1002/(SICI)1521-1878(199810)20:10<785::AID-BIES2>3.3.CO
[34]  
2-D
[35]   Birth and death of duplicated genes in completely sequenced eukaryotes [J].
Wagner, A .
TRENDS IN GENETICS, 2001, 17 (05) :237-239
[36]   Structure, expression and chromosome mapping of MLZE, a novel gene which is preferentially expressed in metastatic melanoma cells [J].
Watabe, E ;
Ito, A ;
Asada, H ;
Endo, Y ;
Kobayashi, T ;
Nakamoto, K ;
Itami, S ;
Takao, S ;
Shinomura, Y ;
Aikou, T ;
Yoshikawa, K ;
Matsuzawa, Y ;
Kitamura, Y ;
Nojima, H .
JAPANESE JOURNAL OF CANCER RESEARCH, 2001, 92 (02) :140-151
[37]   EXPRESSION OF C-ERBB-2 ONCOPROTEIN IN MAMMARY AND EXTRAMAMMARY PAGETS-DISEASE [J].
WOLBER, RA ;
DUPUIS, BA ;
WICK, MR .
AMERICAN JOURNAL OF CLINICAL PATHOLOGY, 1991, 96 (02) :243-247
[38]   A 3-nucleotide deletion in the polypyrimidine tract of intron 7 of the DFNA5 gene causes nonsyndromic hearing impairment in a Chinese family [J].
Yu, CA ;
Meng, XM ;
Zhang, SF ;
Zhao, GP ;
Hu, LD ;
Kong, XY .
GENOMICS, 2003, 82 (05) :575-579
[39]   Gene expression profiling in human fetal liver and identification of tissue- and developmental-stage-specific genes through compiled expression profiles and efficient cloning of full-length cDNAs [J].
Yu, YT ;
Zhang, CG ;
Zhou, GQ ;
Wu, SF ;
Qu, XH ;
Wei, HD ;
Xing, GC ;
Dong, CN ;
Zhai, Y ;
Wan, JH ;
Ouyang, S ;
Li, L ;
Zhang, SW ;
Zhou, KX ;
Zhang, YA ;
Wu, CT ;
He, FC .
GENOME RESEARCH, 2001, 11 (08) :1392-1403