Replication of genome-wide association signals in UK samples reveals risk loci for type 2 diabetes

被引:1694
作者
Zeggini, Eleftheria
Weedon, Michael N.
Lindgren, Cecilia M.
Frayling, Timothy M.
Elliott, Katherine S.
Lango, Hana
Timpson, Nicholas J.
Perry, John R. B.
Rayner, Nigel W.
Freathy, Rachel M.
Barrett, Jeffrey C.
Shields, Beverley
Morris, Andrew P.
Ellard, Sian
Groves, Christopher J.
Harries, Lorna W.
Marchini, Jonathan L.
Owen, Katharine R.
Knight, Beatrice
Cardon, Lon R.
Walker, Mark
Hitman, Graham A.
Morris, Andrew D.
Doney, Alex S. F.
McCarthy, Mark I.
Hattersley, Andrew T.
机构
[1] Univ Oxford, Churchill Hosp, Oxford Ctr Diabet Endocrinol & Metab, Oxford OX3 7LJ, England
[2] Univ Oxford, Wellcome Trust Ctr Human Genet, Oxford OX3 7BN, England
[3] PEninsula Med Sch, Inst Biomed & Clin Sci, Exeter EX1 2LU, Devon, England
[4] Peninsula Med Sch, Inst Biomed & Clin Sci, Diabet Genet Grp, Exeter EX2 5DW, Devon, England
[5] Univ Bristol, MRC, Ctr Casual Anal Translat Epidemiol, Bristol BS2 8PR, Avon, England
[6] Royal Devon & Exeter NHS FDn Trust, Genet Mol Lab, Exeter EX2 5DW, Devon, England
[7] Univ Oxford, Dept Stat, Oxford OX1 3TG, England
[8] Univ Newcastle, Sch Clin Med Sci, Diabet Res Grp, Newcastle Upon Tyne NE2 4HH, Tyne & Wear, England
[9] Barts & London Royal London Hosp, Ctr Diabet & Metab Med, London E1 1BB, England
[10] Univ Dundee, Ninewells Hosp & Med Sch, Div Med & Therapeut, Diabet Res Grp, Dundee DD1 9SY, Scotland
基金
英国惠康基金; 英国医学研究理事会;
关键词
D O I
10.1126/science.1142364
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The molecular mechanisms involved in the development of type 2 diabetes are poorly understood. Starting from genome-wide genotype data for 1924 diabetic cases and 2938 population controls generated by the Wellcome Trust Case Control Consortium, we set out to detect replicated diabetes association signals through analysis of 3757 additional cases and 5346 controls and by integration of our findings with equivalent data from other international consortia. We detected diabetes susceptibility loci in and around the genes CDKAL1, CDKN2A/CDKN2B, and IGF2BP2 and confirmed the recently described associations at HHEX/IDE and SLC30A8. Our findings provide insight into the genetic architecture of type 2 diabetes, emphasizing the contribution of multiple variants of modest effect. The regions identified underscore the importance of pathways influencing pancreatic beta cell development and function in the etiology of type 2 diabetes.
引用
收藏
页码:1336 / 1341
页数:6
相关论文
共 25 条
[1]   A haplotype map of the human genome [J].
Altshuler, D ;
Brooks, LD ;
Chakravarti, A ;
Collins, FS ;
Daly, MJ ;
Donnelly, P ;
Gibbs, RA ;
Belmont, JW ;
Boudreau, A ;
Leal, SM ;
Hardenbol, P ;
Pasternak, S ;
Wheeler, DA ;
Willis, TD ;
Yu, FL ;
Yang, HM ;
Zeng, CQ ;
Gao, Y ;
Hu, HR ;
Hu, WT ;
Li, CH ;
Lin, W ;
Liu, SQ ;
Pan, H ;
Tang, XL ;
Wang, J ;
Wang, W ;
Yu, J ;
Zhang, B ;
Zhang, QR ;
Zhao, HB ;
Zhao, H ;
Zhou, J ;
Gabriel, SB ;
Barry, R ;
Blumenstiel, B ;
Camargo, A ;
Defelice, M ;
Faggart, M ;
Goyette, M ;
Gupta, S ;
Moore, J ;
Nguyen, H ;
Onofrio, RC ;
Parkin, M ;
Roy, J ;
Stahl, E ;
Winchester, E ;
Ziaugra, L ;
Shen, Y .
NATURE, 2005, 437 (7063) :1299-1320
[2]   The common PPARγ Pro12Ala polymorphism is associated with decreased risk of type 2 diabetes [J].
Altshuler, D ;
Hirschhorn, JN ;
Klannemark, M ;
Lindgren, CM ;
Vohl, MC ;
Nemesh, J ;
Lane, CR ;
Schaffner, SF ;
Bolk, S ;
Brewer, C ;
Tuomi, T ;
Gaudet, D ;
Hudson, TJ ;
Daly, M ;
Groop, L ;
Lander, ES .
NATURE GENETICS, 2000, 26 (01) :76-80
[3]   Aligning multiple genomic sequences with the threaded blockset aligner [J].
Blanchette, M ;
Kent, WJ ;
Riemer, C ;
Elnitski, L ;
Smit, AFA ;
Roskin, KM ;
Baertsch, R ;
Rosenbloom, K ;
Clawson, H ;
Green, ED ;
Haussler, D ;
Miller, W .
GENOME RESEARCH, 2004, 14 (04) :708-715
[4]   Hex homeobox gene-dependent tissue positioning is required for organogenesis of the ventral pancreas [J].
Bort, R ;
Martinez-Barbera, JP ;
Beddington, RSP ;
Zaret, KS .
DEVELOPMENT, 2004, 131 (04) :797-806
[5]   Insulin-degrading enzyme identified as a candidate diabetes susceptibility gene in GK rats [J].
Fakhrai-Rad, H ;
Nikoshkov, A ;
Kamel, A ;
Fernström, M ;
Zierath, JR ;
Norgren, S ;
Luthman, H ;
Galli, J .
HUMAN MOLECULAR GENETICS, 2000, 9 (14) :2149-2158
[6]   Partial loss-of-function mutations in insulin-degrading enzyme that induce diabetes also impair degradation of amyloid β-protein [J].
Farris, W ;
Mansourian, S ;
Leissring, MA ;
Eckman, EA ;
Bertram, L ;
Eckman, CB ;
Tanzi, RE ;
Selkoe, DJ .
AMERICAN JOURNAL OF PATHOLOGY, 2004, 164 (04) :1425-1434
[7]   Heart induction by Wnt antagonists depends on the homeodomain transcription factor Hex [J].
Foley, AC ;
Mercola, M .
GENES & DEVELOPMENT, 2005, 19 (03) :387-396
[8]   A common variant in the FTO gene is associated with body mass index and predisposes to childhood and adult obesity [J].
Frayling, Timothy M. ;
Timpson, Nicholas J. ;
Weedon, Michael N. ;
Zeggini, Eleftheria ;
Freathy, Rachel M. ;
Lindgren, Cecilia M. ;
Perry, John R. B. ;
Elliott, Katherine S. ;
Lango, Hana ;
Rayner, Nigel W. ;
Shields, Beverley ;
Harries, Lorna W. ;
Barrett, Jeffrey C. ;
Ellard, Sian ;
Groves, Christopher J. ;
Knight, Bridget ;
Patch, Ann-Marie ;
Ness, Andrew R. ;
Ebrahim, Shah ;
Lawlor, Debbie A. ;
Ring, Susan M. ;
Ben-Shlomo, Yoav ;
Jarvelin, Marjo-Riitta ;
Sovio, Ulla ;
Bennett, Amanda J. ;
Melzer, David ;
Ferrucci, Luigi ;
Loos, Ruth J. F. ;
Barroso, Ines ;
Wareham, Nicholas J. ;
Karpe, Fredrik ;
Owen, Katharine R. ;
Cardon, Lon R. ;
Walker, Mark ;
Hitman, Graham A. ;
Palmer, Colin N. A. ;
Doney, Alex S. F. ;
Morris, Andrew D. ;
Smith, George Davey ;
Hattersley, Andrew T. ;
McCarthy, Mark I. .
SCIENCE, 2007, 316 (5826) :889-894
[9]   Large-scale association studies of variants in genes encoding the pancreatic β-cell KATP channel subunits Kir6.2 (KCNJ11) and SUR1 (ABCC8) confirm that the KCNJ11 E23K variant is associated with type 2 diabetes [J].
Gloyn, AL ;
Weedon, MN ;
Owen, KR ;
Turner, MJ ;
Knight, BA ;
Hitman, G ;
Walker, M ;
Levy, JC ;
Sampson, M ;
Halford, S ;
McCarthy, MI ;
Hattersley, AT ;
Frayling, TM .
DIABETES, 2003, 52 (02) :568-572
[10]   Variant of transcription factor 7-like 2 (TCF7L2) gene confers risk of type 2 diabetes [J].
Grant, SFA ;
Thorleifsson, G ;
Reynisdottir, I ;
Benediktsson, R ;
Manolescu, A ;
Sainz, J ;
Helgason, A ;
Stefansson, H ;
Emilsson, V ;
Helgadottir, A ;
Styrkarsdottir, U ;
Magnusson, KP ;
Walters, GB ;
Palsdottir, E ;
Jonsdottir, T ;
Gudmundsdottir, T ;
Gylfason, A ;
Saemundsdottir, J ;
Wilensky, RL ;
Reilly, MP ;
Rader, DJ ;
Bagger, Y ;
Christiansen, C ;
Gudnason, V ;
Sigurdsson, G ;
Thorsteinsdottir, U ;
Gulcher, JR ;
Kong, A ;
Stefansson, K .
NATURE GENETICS, 2006, 38 (03) :320-323