PseudoViewer: web application and web service for visualizing RNA pseudoknots and secondary structures

被引：76

作者：

Byun, Yanga ^{[1
]}

Han, Kyungsook ^{[1
]}

机构：

[1] Inha Univ, Sch Comp Sci & Engn, Inchon 402751, South Korea

来源：

NUCLEIC ACIDS RESEARCH | 2006年 / 34卷

关键词：

D O I：

10.1093/nar/gkl210

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

Visualizing RNA secondary structures and pseudo-knot structures is essential to bioinformatics systems that deal with RNA structures. However, many bioinformatics systems use heterogeneous data structures and incompatible software components, so integration of software components ( including a visualization component) into a system can be hindered by incompatibilities between the components of the system. This paper presents an XML web service and web application program for visualizing RNA secondary structures with pseudoknots. Experimental results show that the PseudoViewer web service and web application are useful for resolving many problems with incompatible software components as well as for visualizing large-scale RNA secondary structures with pseudoknots of any type. The web service and web application are available at http://pseudoviewer.inha.ac.kr/.

引用

页码：W416 / W422

页数：7

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