Off-resonance R1ρ relaxation outside of the fast exchange limit:: An experimental study of a cavity mutant of T4 lysozyme

被引:41
作者
Korzhnev, DM
Orekhov, VY
Dahlquist, FW
Kay, LE
机构
[1] Univ Toronto, Prot Engn Network Ctr Excellence, Toronto, ON M5S 1A8, Canada
[2] Univ Toronto, Dept Med Genet, Toronto, ON M5S 1A8, Canada
[3] Univ Toronto, Dept Biochem, Toronto, ON M5S 1A8, Canada
[4] Univ Toronto, Dept Chem, Toronto, ON M5S 1A8, Canada
[5] Univ Gothenburg, Swedish NMR Ctr, S-40530 Gothenburg, Sweden
[6] Univ Oregon, Inst Mol Biol, Eugene, OR 97403 USA
[7] Univ Oregon, Dept Chem, Eugene, OR 97403 USA
基金
加拿大健康研究院;
关键词
conformational exchange; N-15 relaxation dispersion spectroscopy; offset-dependence of R-1 rho; T4; lysozyme;
D O I
10.1023/A:1023039902737
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
An N-15 off-resonance R-1rho spin relaxation study of an L99A point mutant of T4 lysozyme is presented. Previous CPMG-based relaxation dispersion studies of exchange in this protein have established that the molecule interconverts between a populated ground state and an excited state (3.4%) with an exchange rate constant of 1450 s(-1) at 25degreesC. It is shown that for the majority of residues in this protein the offset dependence of the R-1rho relaxation rates cannot be well fit using models which are only valid in the fast exchange regime. In contrast, a recently derived expression by Trott and Palmer (J. Magn. Reson., 154, 157-160, 2002) which is valid over a wider window of exchange than other relations, is shown to fit the data well. Values of (signed) chemical shift differences between exchanging sites have been extracted and are in reasonable agreement with shift differences measured using CPMG methods. A set of simulations is presented which help establish the exchange regimes that are best suited to analysis by off-resonance R-1rho techniques.
引用
收藏
页码:39 / 48
页数:10
相关论文
共 31 条
[2]   Monitoring macromolecular motions on microsecond to millisecond time scales by R(1)rho-R(1) constant relaxation time NMR spectroscopy [J].
Akke, M ;
Palmer, AG .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1996, 118 (04) :911-912
[3]   DIRECT MEASUREMENTS OF THE DISSOCIATION-RATE CONSTANT FOR INHIBITOR-ENZYME COMPLEXES VIA THE T-1-RHO AND T-2 (CPMG) METHODS [J].
DAVIS, DG ;
PERLMAN, ME ;
LONDON, RE .
JOURNAL OF MAGNETIC RESONANCE SERIES B, 1994, 104 (03) :266-275
[4]   RESPONSE OF A PROTEIN-STRUCTURE TO CAVITY-CREATING MUTATIONS AND ITS RELATION TO THE HYDROPHOBIC EFFECT [J].
ERIKSSON, AE ;
BAASE, WA ;
ZHANG, XJ ;
HEINZ, DW ;
BLABER, M ;
BALDWIN, EP ;
MATTHEWS, BW .
SCIENCE, 1992, 255 (5041) :178-183
[5]   BACKBONE DYNAMICS OF A FREE AND A PHOSPHOPEPTIDE-COMPLEXED SRC HOMOLOGY-2 DOMAIN STUDIED BY N-15 NMR RELAXATION [J].
FARROW, NA ;
MUHANDIRAM, R ;
SINGER, AU ;
PASCAL, SM ;
KAY, CM ;
GISH, G ;
SHOELSON, SE ;
PAWSON, T ;
FORMANKAY, JD ;
KAY, LE .
BIOCHEMISTRY, 1994, 33 (19) :5984-6003
[6]   Access of ligands to cavities within the core of a protein is rapid [J].
Feher, VA ;
Baldwin, EP ;
Dahlquist, FW .
NATURE STRUCTURAL BIOLOGY, 1996, 3 (06) :516-521
[7]   A method for determining B1 field inhomogeneity.: Are the biases assumed in heteronuclear relaxation experiments usually underestimated? [J].
Guenneugues, M ;
Berthault, P ;
Desvaux, H .
JOURNAL OF MAGNETIC RESONANCE, 1999, 136 (01) :118-126
[8]   NMR detection of multiple transitions to low-populated states in azurin [J].
Korzhnev, DM ;
Karlsson, BG ;
Orekhov, VY ;
Billeter, M .
PROTEIN SCIENCE, 2003, 12 (01) :56-65
[9]   An NMR experiment for the accurate measurement of heteronuclear spin-lock relaxation rates [J].
Korzhnev, DM ;
Skrynnikov, NR ;
Millet, O ;
Torchia, DA ;
Kay, LE .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2002, 124 (36) :10743-10753
[10]   MUNIN: Application of three-way decomposition to the analysis of heteronuclear NMR relaxation data [J].
Korzhnev, DM ;
Ibraghimov, IV ;
Billeter, M ;
Orekhov, VY .
JOURNAL OF BIOMOLECULAR NMR, 2001, 21 (03) :263-268