Unambiguous evidence for efficient chemical catalysis of adenosine ester aminolysis by its 2′/3′-OH

被引:21
作者
Bayryamov, Stanislav G. [1 ]
Rangelov, Miroslav A. [1 ]
Mladjova, Aneta P. [1 ]
Yomtova, Vihra [1 ]
Petkov, Dimiter D. [1 ]
机构
[1] Bulgarian Acad Sci, Inst Organ Chem, Lab BioCatalysis, BU-1113 Sofia, Bulgaria
关键词
D O I
10.1021/ja068447g
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Intramolecular aminolysis reactions, catalyzed by a vicinal OH group, were studied computationally as model reactions of ribosome-catalyzed intracomplex aminolysis. The results predicts 2-6-fold higher enthalpic than entropic contribution to the reduction of the activation free energy, caused by the combined proximity effect of the attacking syn-NH2 group and the catalytic syn-OH group. The acceleration predicted by the theory is supported by the observed instantaneous lactamization of ornithinyl adenosine as compared to the much slower lactamization of ornithinyl 2'-deoxyadenosine. This observation is the first unambiguous experimental demonstration of chemical catalysis of the 1,2-diol monoester aminolysis by its vicinal 2-OH groupthe reaction naturally catalyzed by ribosome.
引用
收藏
页码:5790 / +
页数:3
相关论文
共 16 条
[1]   2′/3′-O-peptidyl adenosine as a general base catalyst of its own external peptidyl transfer:: Implications for the ribosome catalytic mechanism [J].
Changalov, MM ;
Ivanova, GD ;
Rangelov, MA ;
Acharya, P ;
Acharya, S ;
Minakawa, N ;
Földesi, A ;
Stoineva, IB ;
Yomtova, VM ;
Roussev, CD ;
Matsuda, A ;
Chattopadhyaya, J ;
Petkov, DD .
CHEMBIOCHEM, 2005, 6 (06) :992-996
[2]   Linear free energy relationships and kinetic isotope effects reveal the chemistry of the Ado 2′-OH group [J].
Changalov, Mohamed M. ;
Petkov, Dimiter D. .
TETRAHEDRON LETTERS, 2007, 48 (13) :2381-2384
[3]   PARTICIPATION IN PROTEIN-BIOSYNTHESIS OF TRANSFER RIBONUCLEIC-ACIDS BEARING ALTERED 3'-TERMINAL RIBOSYL RESIDUES [J].
CHINALI, G ;
SPRINZL, M ;
PARMEGGIANI, A ;
CRAMER, F .
BIOCHEMISTRY, 1974, 13 (15) :3001-3010
[4]   WIN SOME, LOSE SOME - ENTHALPY-ENTROPY COMPENSATION IN WEAK INTERMOLECULAR INTERACTIONS [J].
DUNITZ, JD .
CHEMISTRY & BIOLOGY, 1995, 2 (11) :709-712
[5]   PARTICIPATION OF ISOMERIC TRANSFER-RNAS IN PARTIAL REACTIONS OF PROTEIN-BIOSYNTHESIS [J].
HECHT, SM .
TETRAHEDRON, 1977, 33 (14) :1671-1696
[6]   The syn-oriented 2-OH provides a favorable proton transfer geometry in 1,2-diol monoester aminolysis: Implications for the ribosome mechanism [J].
Rangelov, MA ;
Vayssilov, GN ;
Yomtova, VM ;
Petkov, DD .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2006, 128 (15) :4964-4965
[7]   Mechanism of peptide bond formation on the ribosome [J].
Rodnina, Marina V. ;
Beringer, Malte ;
Wintermeyer, Wolfgang .
QUARTERLY REVIEWS OF BIOPHYSICS, 2006, 39 (03) :203-225
[8]   MECHANISM OF AMINOLYSIS OF ACETATE ESTERS [J].
SATTERTH.AC ;
JENCKS, WP .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1974, 96 (22) :7018-7031
[9]   Structural insights into the roles of water and the 2′ hydroxyl of the P site tRNA in the peptidyl transferase reaction [J].
Schmeing, TM ;
Huang, KS ;
Kitchen, DE ;
Strobel, SA ;
Steitz, TA .
MOLECULAR CELL, 2005, 20 (03) :437-448
[10]   What are the roles of substrate-assisted catalysis and proximity effects in peptide bond formation by the ribosome? [J].
Sharma, PK ;
Xiang, Y ;
Kato, M ;
Warshel, A .
BIOCHEMISTRY, 2005, 44 (34) :11307-11314