Atomic details of near-transition state conformers for enzyme phosphoryl transfer revealed by MgF3- rather than by phosphoranes

被引:69
作者
Baxter, Nicola J. [1 ]
Bowler, Matthew W. [2 ]
Alizadeh, Tooba [1 ]
Cliff, Matthew J. [1 ]
Hounslow, Andrea M. [1 ]
Wu, Bin [3 ]
Berkowitz, David B. [3 ]
Williams, Nicholas H. [4 ]
Blackburn, G. Michael [1 ]
Waltho, Jonathan P. [1 ,5 ,6 ]
机构
[1] Univ Sheffield, Dept Mol Biol & Biotechnol, Sheffield S10 2TN, S Yorkshire, England
[2] European Synchrotron Radiat Facil, Struct Biol Grp, F-38043 Grenoble, France
[3] Univ Nebraska, Dept Chem, Lincoln, NE 68588 USA
[4] Univ Sheffield, Dept Chem, Ctr Chem Biol, Sheffield S3 7HF, S Yorkshire, England
[5] Univ Manchester, Fac Life Sci, Manchester M1 7DN, Lancs, England
[6] Univ Manchester, Manchester Interdisciplinary Bioctr, Manchester M1 7DN, Lancs, England
基金
英国生物技术与生命科学研究理事会;
关键词
19F NMR; phosphoryl transfer enzyme; transition state analogue; trifluoromagnesate; BETA-PHOSPHOGLUCOMUTASE; MAGNESIUM FLUORIDE; KINETIC-ANALYSIS; ACTIVE-SITE; PROTEIN; SUBSTRATE; ALUMINUM; ANALOG; INTERMEDIATE; PHOSPHATASES;
D O I
10.1073/pnas.0910333106
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Prior evidence supporting the direct observation of phosphorane intermediates in enzymatic phosphoryl transfer reactions was based on the interpretation of electron density corresponding to trigonal species bridging the donor and acceptor atoms. Close examination of the crystalline state of beta-phosphoglucomutase, the archetypal phosphorane intermediate-containing enzyme, reveals that the trigonal species is not PO3-, but is MgF3- (trifluoromagnesate). Although MgF3- complexes are transition state analogues rather than phosphoryl group transfer reaction intermediates, the presence of fluorine nuclei in near-transition state conformations offers new opportunities to explore the nature of the interactions, in particular the independent measures of local electrostatic and hydrogen-bonding distributions using F-19 NMR. Measurements on three beta-PGM-MgF3--sugar phosphate complexes show a remarkable relationship between NMR chemical shifts, primary isotope shifts, NOEs, cross hydrogen bond F center dot center dot center dot H-N scalar couplings, and the atomic positions determined from the high-resolution crystal structure of the beta-PGM-MgF3--G6P complex. The measurements provide independent validation of the structural and isoelectronic MgF3- model of near-transition state conformations.
引用
收藏
页码:4555 / 4560
页数:6
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