Atomic details of near-transition state conformers for enzyme phosphoryl transfer revealed by MgF3- rather than by phosphoranes

被引:69
作者
Baxter, Nicola J. [1 ]
Bowler, Matthew W. [2 ]
Alizadeh, Tooba [1 ]
Cliff, Matthew J. [1 ]
Hounslow, Andrea M. [1 ]
Wu, Bin [3 ]
Berkowitz, David B. [3 ]
Williams, Nicholas H. [4 ]
Blackburn, G. Michael [1 ]
Waltho, Jonathan P. [1 ,5 ,6 ]
机构
[1] Univ Sheffield, Dept Mol Biol & Biotechnol, Sheffield S10 2TN, S Yorkshire, England
[2] European Synchrotron Radiat Facil, Struct Biol Grp, F-38043 Grenoble, France
[3] Univ Nebraska, Dept Chem, Lincoln, NE 68588 USA
[4] Univ Sheffield, Dept Chem, Ctr Chem Biol, Sheffield S3 7HF, S Yorkshire, England
[5] Univ Manchester, Fac Life Sci, Manchester M1 7DN, Lancs, England
[6] Univ Manchester, Manchester Interdisciplinary Bioctr, Manchester M1 7DN, Lancs, England
基金
英国生物技术与生命科学研究理事会;
关键词
19F NMR; phosphoryl transfer enzyme; transition state analogue; trifluoromagnesate; BETA-PHOSPHOGLUCOMUTASE; MAGNESIUM FLUORIDE; KINETIC-ANALYSIS; ACTIVE-SITE; PROTEIN; SUBSTRATE; ALUMINUM; ANALOG; INTERMEDIATE; PHOSPHATASES;
D O I
10.1073/pnas.0910333106
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Prior evidence supporting the direct observation of phosphorane intermediates in enzymatic phosphoryl transfer reactions was based on the interpretation of electron density corresponding to trigonal species bridging the donor and acceptor atoms. Close examination of the crystalline state of beta-phosphoglucomutase, the archetypal phosphorane intermediate-containing enzyme, reveals that the trigonal species is not PO3-, but is MgF3- (trifluoromagnesate). Although MgF3- complexes are transition state analogues rather than phosphoryl group transfer reaction intermediates, the presence of fluorine nuclei in near-transition state conformations offers new opportunities to explore the nature of the interactions, in particular the independent measures of local electrostatic and hydrogen-bonding distributions using F-19 NMR. Measurements on three beta-PGM-MgF3--sugar phosphate complexes show a remarkable relationship between NMR chemical shifts, primary isotope shifts, NOEs, cross hydrogen bond F center dot center dot center dot H-N scalar couplings, and the atomic positions determined from the high-resolution crystal structure of the beta-PGM-MgF3--G6P complex. The measurements provide independent validation of the structural and isoelectronic MgF3- model of near-transition state conformations.
引用
收藏
页码:4555 / 4560
页数:6
相关论文
共 33 条
  • [11] MgF3- as a transition state analog of phosphoryl transfer
    Graham, DL
    Lowe, PN
    Grime, GW
    Marsh, M
    Rittinger, K
    Smerdon, SJ
    Gamblin, SJ
    Eccleston, JF
    [J]. CHEMISTRY & BIOLOGY, 2002, 9 (03): : 375 - 381
  • [12] Access to the structures of fluoromagnesium compounds:: synthesis and structural characterization of the β-diketiminato magnesium fluoride [{CH(CMeNAr)2}Mg(μ-F)(THF)]2•toluene
    Hao, HJ
    Roesky, HW
    Ding, YQ
    Cui, CM
    Schormann, M
    Schmidt, HG
    Noltemeyer, M
    Zemva, B
    [J]. JOURNAL OF FLUORINE CHEMISTRY, 2002, 115 (02) : 143 - 147
  • [13] CHARACTERIZATION AND KINETIC-ANALYSIS OF THE INTRACELLULAR DOMAIN OF HUMAN-PROTEIN-TYROSINE-PHOSPHATASE-BETA (HPTP-BETA) USING SYNTHETIC PHOSPHOPEPTIDES
    HARDER, KW
    OWEN, P
    WONG, LKH
    AEBERSOLD, R
    CLARKLEWIS, I
    JIRIK, FR
    [J]. BIOCHEMICAL JOURNAL, 1994, 298 : 395 - 401
  • [14] P-31 NMR AS A PROBE FOR PHOSPHOPROTEINS
    JAMES, TL
    [J]. CRC CRITICAL REVIEWS IN BIOCHEMISTRY, 1985, 18 (01): : 1 - 30
  • [15] The rate of hydrolysis of phosphomonoester dianions and the exceptional catalytic proficiencies of protein and inositol phosphatases
    Lad, C
    Williams, NH
    Wolfenden, R
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2003, 100 (10) : 5607 - 5610
  • [16] The pentacovalent phosphorus intermediate of a phosphoryl transfer reaction
    Lahiri, SD
    Zhang, GF
    Dunaway-Mariano, D
    Allen, KN
    [J]. SCIENCE, 2003, 299 (5615) : 2067 - 2071
  • [17] Crystallization and preliminary X-ray diffraction studies of β-phosphoglucomutase from Lactococcus lactus
    Lahiri, SD
    Zhang, GF
    Radstrom, P
    Dunaway-Mariano, D
    Allen, KN
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 2002, 58 : 324 - 326
  • [18] Caught in the act:: The structure of phosphorylated β-phosphoglucomutase from Lactococcus lactis
    Lahiri, SD
    Zhang, GF
    Dunaway-Mariano, D
    Allen, KN
    [J]. BIOCHEMISTRY, 2002, 41 (26) : 8351 - 8359
  • [19] UvrD helicase unwinds DNA one base pair at a time by a two-part power stroke
    Lee, Jae Young
    Yang, Wei
    [J]. CELL, 2006, 127 (07) : 1349 - 1360
  • [20] Phosphorylated aspartate in the structure of a response regulator protein
    Lewis, RJ
    Brannigan, JA
    Muchová, K
    Barák, I
    Wilkinson, AJ
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1999, 294 (01) : 9 - 15