Establishing, maintaining and modifying DNA methylation patterns in plants and animals

被引:2702
作者
Law, Julie A. [2 ]
Jacobsen, Steven E. [1 ,2 ]
机构
[1] Univ Calif Los Angeles, Howard Hughes Med Inst, Los Angeles, CA 90095 USA
[2] Univ Calif Los Angeles, Dept Mol Cell & Dev Biol, Los Angeles, CA 90095 USA
基金
美国国家卫生研究院;
关键词
RNA-POLYMERASE-IV; DE-NOVO METHYLATION; HISTONE LYSINE METHYLATION; MAMMALIAN GERM-CELLS; EMBRYONIC STEM-CELLS; ARABIDOPSIS-THALIANA; PIWI PROTEINS; BINDING PROTEIN; MOUSE EMBRYO; SRA DOMAIN;
D O I
10.1038/nrg2719
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Cytosine DNA methylation is a stable epigenetic mark that is crucial for diverse biological processes, including gene and transposon silencing, imprinting and X chromosome inactivation. Recent findings in plants and animals have greatly increased our understanding of the pathways used to accurately target, maintain and modify patterns of DNA methylation and have revealed unanticipated mechanistic similarities between these organisms. Key roles have emerged for small RNAs, proteins with domains that bind methylated DNA and DNA glycosylases in these processes. Drawing on insights from both plants and animals should deepen our understanding of the regulation and biological significance of DNA methylation.
引用
收藏
页码:204 / 220
页数:17
相关论文
共 185 条
[1]   Role of the Arabidopsis DNA glycosylase/lyase ROS1 in active DNA demethylation [J].
Agius, Fernanda ;
Kapoor, Avnish ;
Zhu, Jian-Kang .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (31) :11796-11801
[2]   Double-stranded RNA-mediated silencing of genomic tandem repeats and transposable elements in the D-melanogaster germline [J].
Aravin, AA ;
Naumova, NM ;
Tulin, AV ;
Vagin, VV ;
Rozovsky, YM ;
Gvozdev, VA .
CURRENT BIOLOGY, 2001, 11 (13) :1017-1027
[3]   A novel class of small RNAs bind to MILI protein in mouse testes [J].
Aravin, Alexei ;
Gaidatzis, Dimos ;
Pfeffer, Sebastien ;
Lagos-Quintana, Mariana ;
Landgraf, Pablo ;
Iovino, Nicola ;
Morris, Patricia ;
Brownstein, Michael J. ;
Kuramochi-Miyagawa, Satomi ;
Nakano, Toru ;
Chien, Minchen ;
Russo, James J. ;
Ju, Jingyue ;
Sheridan, Robert ;
Sander, Chris ;
Zavolan, Mihaela ;
Tuschl, Thomas .
NATURE, 2006, 442 (7099) :203-207
[4]   A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice [J].
Aravin, Alexei A. ;
Sachidanandam, Ravi ;
Bourc'his, Deborah ;
Schaefer, Christopher ;
Pezic, Dubravka ;
Toth, Katalin Fejes ;
Bestor, Timothy ;
Hannon, Gregory J. .
MOLECULAR CELL, 2008, 31 (06) :785-799
[5]   Small RNA guides for de novo DNA methylation in mammalian germ cells [J].
Aravin, Alexei A. ;
Bourc'his, Deborah .
GENES & DEVELOPMENT, 2008, 22 (08) :970-975
[6]   The Piwi-piRNA pathway provides an adaptive defense in the transposon arms race [J].
Aravin, Alexei A. ;
Hannon, Gregory J. ;
Brennecke, Julius .
SCIENCE, 2007, 318 (5851) :761-764
[7]   Developmentally regulated piRNA clusters implicate MILI in transposon control [J].
Aravin, Alexei A. ;
Sachidanandam, Ravi ;
Girard, Angelique ;
Fejes-Toth, Katalin ;
Hannon, Gregory J. .
SCIENCE, 2007, 316 (5825) :744-747
[8]   Recognition of hemi-methylated DNA by the SRA protein UHRF1 by a base-flipping mechanism [J].
Arita, Kyohei ;
Ariyoshi, Mariko ;
Tochio, Hidehito ;
Nakamura, Yusuke ;
Shirakawa, Masahiro .
NATURE, 2008, 455 (7214) :818-U12
[9]   IDN1 and IDN2 are required for de novo DNA methylation in Arabidopsis thaliana [J].
Ausin, Israel ;
Mockler, Todd C. ;
Chory, Joanne ;
Jacobsen, Steven E. .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2009, 16 (12) :1325-1327
[10]   Structural basis for recognition of hemi-methylated DNA by the SRA domain of human UHRF1 [J].
Avvakumov, George V. ;
Walker, John R. ;
Xue, Sheng ;
Li, Yanjun ;
Duan, Shili ;
Bronner, Christian ;
Arrowsmith, Cheryl H. ;
Dhe-Paganon, Sirano .
NATURE, 2008, 455 (7214) :822-U13