Marine ecological genomics:: when genomics meets marine ecology

被引：27

作者：

Dupont, Samuel ^{[1
]}

Wilson, Karen ^{[1
]}

Obst, Mathias ^{[1
]}

Skold, Helen ^{[1
]}

Nakano, Hiroaki ^{[1
]}

Thorndyke, Michael C. ^{[1
]}

机构：

[1] Kristineberg Marine Stn, S-45034 Fiskebackskil, Sweden

来源：

MARINE ECOLOGY PROGRESS SERIES | 2007年 / 332卷

关键词：

sequencing; ESTs; microarrays; proteomics; barcoding;

D O I：

10.3354/meps332257

中图分类号：

Q14 [生态学（生物生态学）];

学科分类号：

071012 ; 0713 ;

摘要：

Genomics, proteomics and metabolomics (the 'omic' technologies) have revolutionized the way we work and are able to think about working, and have opened up hitherto unimagined opportunities in all research fields. In marine ecology, while 'standard' molecular and genetic approaches are well known, the newer technologies are taking longer to make an impact. In this review we explore the potential and promise offered by genomics, genome technologies, expressed sequence tag (EST) collections, microarrays, proteomics and bar coding for modern marine ecology. Methods are succinctly presented with both benefits and limitations discussed. Through examples from the literature, we show how these tools can be used to answer fundamental ecological questions, e.g. 'what is the relationship between community structure and ecological function in ecosystems?'; 'how can a species and the phylogenetic relationship between taxa be identified?'; 'what are the factors responsible for the limits of the ecological niche?'; or 'what explains the variations in life-history patterns among species?'The impact of ecological ideas and concepts on genomic science is also discussed.

引用

页码：257 / 273

页数：17

共 135 条

[1] Animal evolution - the end of the intermediate taxa? [J].

Adoutte, A ;

Balavoine, G ;

Lartillot, N ;

de Rosa, R .

TRENDS IN GENETICS, 1999, 15 (03) :104-108

[2]

AGRENIUS S, 2003, NATURVARDSVERKET, P1

[3] Evidence for a clade of nematodes, arthropods and other moulting animals [J].

Aguinaldo, AMA ;

Turbeville, JM ;

Linford, LS ;

Rivera, MC ;

Garey, JR ;

Raff, RA ;

Lake, JA .

NATURE, 1997, 387 (6632) :489-493

[4] Biological rhythmicity in expressed proteins of the marine dinoflagellate Lingulodinium polyedrum demonstrated by chronological proteomics [J].

Akimoto, H ;

Wu, C ;

Kinumi, T ;

Ohmiya, Y .

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2004, 315 (02) :306-312

[5] Regenerative growth is impacted by TCDD: Gene expression analysis reveals extracellular matrix modulation [J].

Andreasen, Eric A. ;

Mathew, Lijoy K. ;

Tanguay, Robert L. .

TOXICOLOGICAL SCIENCES, 2006, 92 (01) :254-269

[6] Alternative life histories shape brain gene expression profiles in males of the same population [J].

Aubin-Horth, N ;

Landry, CR ;

Letcher, BH ;

Hofmann, HA .

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2005, 272 (1573) :1655-1662

[7] Sharp genetic breaks among populations of Haptosquilla pulchella (Stomatopoda) indicate limits to larval transport:: patterns, causes, and consequences [J].

Barber, PH ;

Palumbi, SR ;

Erdmann, MV ;

Moosa, MK .

MOLECULAR ECOLOGY, 2002, 11 (04) :659-674

[8] Comparative genomics of two closely related unicellular thermo-acidophilic red algae, Galdieria sulphuraria and Cyanidioschyzon merolae, reveals the molecular basis of the metabolic flexibility of Galdieria sulphuraria and significant differences in carbohydrate metabolism of both algae [J].

Barbier, G ;

Oesterhelt, C ;

Larson, MD ;

Halgren, RG ;

Wilkerson, C ;

Garavito, RM ;

Benning, C ;

Weber, APM .

PLANT PHYSIOLOGY, 2005, 137 (02) :460-474

[9] Comparative proteomics of symbiotic and aposymbiotic juvenile soft corals [J].

Barneah, O ;

Benayahu, Y ;

Weis, V .

MARINE BIOTECHNOLOGY, 2006, 8 (01) :11-16

[10] Identifying spiders through DNA barcodes [J].

Barrett, RDH ;

Hebert, PDN .

CANADIAN JOURNAL OF ZOOLOGY, 2005, 83 (03) :481-491

← 1 2 3 4 5 6 7 8 9 10 →