Zipf's law in gene expression

被引:180
作者
Furusawa, C [1 ]
Kaneko, K
机构
[1] RIKEN, Inst Phys & Chem Res, Ctr Dev Biol, Kobe, Hyogo 6500047, Japan
[2] Univ Tokyo, Dept Pure & Appl Sci, Meguro Ku, Tokyo 1538902, Japan
关键词
D O I
10.1103/PhysRevLett.90.088102
中图分类号
O4 [物理学];
学科分类号
0702 ;
摘要
Using data from gene expression databases on various organisms and tissues, including yeast, nematodes, human normal and cancer tissues, and embryonic stem cells, we found that the abundances of expressed genes exhibit a power-law distribution with an exponent close to -1; i.e., they obey Zipf's law. Furthermore, by simulations of a simple model with an intracellular reaction network, we found that Zipf's law of chemical abundance is a universal feature of cells where such a network optimizes the efficiency and faithfulness of self-reproduction. These findings provide novel insights into the nature of the organization of reaction dynamics in living cells.
引用
收藏
页码:4 / 088102
页数:4
相关论文
共 15 条
[1]  
[Anonymous], 1949, Human behaviour and the principle of least-effort
[2]   PUNCTUATED EQUILIBRIUM AND CRITICALITY IN A SIMPLE-MODEL OF EVOLUTION [J].
BAK, P ;
SNEPPEN, K .
PHYSICAL REVIEW LETTERS, 1993, 71 (24) :4083-4086
[3]  
Bak P., 1996, NATURE WORKS
[4]  
FURUSAWA C, IN PRESS
[5]   The large-scale organization of metabolic networks [J].
Jeong, H ;
Tombor, B ;
Albert, R ;
Oltvai, ZN ;
Barabási, AL .
NATURE, 2000, 407 (6804) :651-654
[6]   Lethality and centrality in protein networks [J].
Jeong, H ;
Mason, SP ;
Barabási, AL ;
Oltvai, ZN .
NATURE, 2001, 411 (6833) :41-42
[7]   Changes in gene expression associated with developmental arrest and longevity in Caenorhabditis elegans [J].
Jones, SJM ;
Riddle, DL ;
Pouzyrev, AT ;
Velculescu, VE ;
Hillier, L ;
Eddy, SR ;
Stricklin, SL ;
Baillie, DL ;
Waterston, R ;
Marra, MA .
GENOME RESEARCH, 2001, 11 (08) :1346-1352
[8]   On a kinetic origin of heredity: Minority control in a replicating system with mutually catalytic molecules [J].
Kaneko, K ;
Yomo, T .
JOURNAL OF THEORETICAL BIOLOGY, 2002, 214 (04) :563-576
[9]  
Kuznetsov VA, 2002, GENETICS, V161, P1321
[10]   SAGEmap: A public gene expression resource [J].
Lash, AE ;
Tolstoshev, CM ;
Wagner, L ;
Schuler, GD ;
Strausberg, RL ;
Riggins, GJ ;
Altschul, SF .
GENOME RESEARCH, 2000, 10 (07) :1051-1060