Ordered cloned DNA map of the genome of Vibrio cholerae 569B and localization of genetic markers

被引:15
作者
Chatterjee, S [1 ]
Mondal, AK [1 ]
Begum, NA [1 ]
Roychoudhury, S [1 ]
Das, J [1 ]
机构
[1] Indian Inst Chem Biol, Div Biophys, Calcutta 700032, W Bengal, India
关键词
D O I
10.1128/JB.180.4.901-908.1998
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
By using a low-resolution macrorestriction map as the foundation (R. Majumder et al., J. Bacteriol. 176:1105-1112, 1996), an ordered cloned DNA map of the 3.2-Mb chromosome of the hypertoxinogenic strain 569B of Vibrio cholerae has been constructed, A cosmid library the size of about 4,000 clones containing more than 120 Mb of V. cholerae genomic DNA (40-genome equivalent) was generated. By combining landmark analysis and chromosome walking, the cosmid clones were assembled into 13 contigs covering about 90% of the V. cholerae genome. A total of 92 cosmid clones were assigned to the genome and to regions defined by NotI, SfiI, and CeuI macrorestriction maps, Twenty-seven cloned genes, 9 rrn operons, and 10 copies of a repetitive DNA sequence (IS1004) have been positioned on the ordered cloned DNA map.
引用
收藏
页码:901 / 908
页数:8
相关论文
共 45 条
[1]   AN ORDERED COLLECTION OF BACILLUS-SUBTILIS DNA SEGMENTS CLONED IN YEAST ARTIFICIAL CHROMOSOMES [J].
AZEVEDO, V ;
ALVAREZ, E ;
ZUMSTEIN, E ;
DAMIANI, G ;
SGARAMELLA, V ;
EHRLICH, SD ;
SERROR, P .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1993, 90 (13) :6047-6051
[2]   THE DNA ADENINE METHYLTRANSFERASE-ENCODING GENE (DAM) OF VIBRIO-CHOLERAE [J].
BANDYOPADHYAY, R ;
DAS, J .
GENE, 1994, 140 (01) :67-71
[3]   CLONING OF A GENE (ZOT) ENCODING A NEW TOXIN PRODUCED BY VIBRIO-CHOLERAE [J].
BAUDRY, B ;
FASANO, A ;
KETLEY, J ;
KAPER, JB .
INFECTION AND IMMUNITY, 1992, 60 (02) :428-434
[4]   CLONING AND CHARACTERIZATION OF MUTL AND MUTS GENES OF VIBRIO-CHOLERAE - NUCLEOTIDE-SEQUENCE OF THE MUTL GENE [J].
BERA, TK ;
GHOSH, SK ;
DAS, J .
NUCLEIC ACIDS RESEARCH, 1989, 17 (15) :6241-6251
[5]   CHOLERA-TOXIN (CTX) GENETIC ELEMENT IN VIBRIO-CHOLERAE O139 [J].
BHADRA, RK ;
ROYCHOUDHURY, S ;
BANERJEE, RK ;
KAR, S ;
MAJUMDAR, R ;
SENGUPTA, S ;
CHATTERJEE, S ;
KHETAWAT, G ;
DAS, J .
MICROBIOLOGY-SGM, 1995, 141 :1977-1983
[6]   CHROMOSOME MOBILIZATION IN VIBRIO-CHOLERAE (BIOTYPE ELTOR) MEDIATED BY SEX FACTOR P [J].
BHASKARAN, K ;
SINHA, VB ;
IYER, SS .
JOURNAL OF GENERAL MICROBIOLOGY, 1973, 78 (SEP) :119-124
[7]   The secY gene of V-cholerae: identification, cloning and characterization [J].
Bhattacharyya, D ;
Das, J .
GENE, 1997, 196 (1-2) :261-266
[8]   DNA fingerprinting of Vibrio cholerae strains with a novel insertion sequence element: A tool to identify epidemic strains [J].
Bik, EM ;
Gouw, RD ;
Mooi, FR .
JOURNAL OF CLINICAL MICROBIOLOGY, 1996, 34 (06) :1453-1461
[9]   ORDERED COSMID LIBRARY AND HIGH-RESOLUTION PHYSICAL-GENETIC MAP OF HELICOBACTER-PYLORI STRAIN NCTC11638 [J].
BUKANOV, NO ;
BERG, DE .
MOLECULAR MICROBIOLOGY, 1994, 11 (03) :509-523
[10]   DETAILED PHYSICAL MAP AND SET OF OVERLAPPING CLONES COVERING THE GENOME OF THE ARCHAEBACTERIUM HALOFERAX-VOLCANII DS2 [J].
CHARLEBOIS, RL ;
SCHALKWYK, LC ;
HOFMAN, JD ;
DOOLITTLE, WF .
JOURNAL OF MOLECULAR BIOLOGY, 1991, 222 (03) :509-524