TRAMPR: an R package for analysis and matching of terminal-restriction fragment length polymorphism (TRFLP) profiles

被引：41

作者：

Fitzjohn, Richard G. ^{[1
]}

Dickie, Ian A. ^{[1
]}

机构：

[1] Landcare Res, Lincoln 7640, New Zealand

来源：

MOLECULAR ECOLOGY NOTES | 2007年 / 7卷 / 04期

关键词：

community analysis; pattern matching; R; TRFLP;

D O I：

10.1111/j.1471-8286.2007.01744.x

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

TRAMPR ( TRFLP analysis and matching package for R) is a package for matching multiple terminal restriction fragment length polymorphism ( TRFLP) profiles between unknown samples and a database of known TRFLP profiles in order to infer the presence of species in environmental samples. It permits simultaneous analysis of multiple samples and facilitates direct workflow from electrophoresis output through to community analyses. TRAMPR also resolves the issues of multiple TRFLP profiles within a species and ( conversely) shared TRFLP profiles across species.

引用

收藏

页码：583 / 587

页数：5

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