Nonconserved residues Ala287 and Ser290 of the Cryptosporidium hominis thymidylate synthase domain facilitate its rapid rate of catalysis

被引:19
作者
Doan, Lanxuan T. [1 ]
Martucci, W. Edward [1 ]
Vargo, Melissa A. [1 ]
Atreya, Chloe E. [1 ]
Anderson, Karen S. [1 ]
机构
[1] Yale Univ, Sch Med, Dept Pharmacol, New Haven, CT 06520 USA
关键词
D O I
10.1021/bi700531r
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Cryptosporidium hominis TS-DHFR exhibits an unusually high rate of catalysis at the TS domain, at least 10-fold greater than those of other TS enzymes. Using site-directed mutagenesis, we have mutated residues Ala287 and Ser290 in the folate-binding helix to phenylalanine and glycine, respectively, the corresponding residues in human and most other TS enzymes. Our results show that the mutant A287F, the mutant S290G, and the double mutant all have reduced affinities for methylene tetrahydrofolate and reduced rates of reaction at the TS domain. Interestingly, the S290G mutant enzyme had the lowest TS activity, with a catalytic efficiency similar to 200-fold lower than that of the wild type (WT). The rate of conformational change of the S290G mutant is similar to 80 times slower than that of WT, resulting in a change in the rate-limiting step from hydride transfer to covalent ternary complex formation. We have determined the crystal structure of ligand-bound S290G mutant enzyme, which shows that the primary effect of the mutation is an increase in the distance between the TS ligands. The kinetic and crystal structure data presented here provide the first evidence explaining the unusually fast TS rate in C. hominis.
引用
收藏
页码:8379 / 8391
页数:13
相关论文
共 48 条
[1]   Approaches to solving the rigid receptor problem by identifying a minimal set of flexible residues during ligand docking [J].
Anderson, AC ;
O'Neil, RH ;
Surti, TS ;
Stroud, RM .
CHEMISTRY & BIOLOGY, 2001, 8 (05) :445-457
[2]   The structural mechanism for half-the-sites reactivity in an enzyme, thymidylate synthase, involves a relay of changes between subunits [J].
Anderson, AC ;
O'Neil, RH ;
DeLano, WL ;
Stroud, RM .
BIOCHEMISTRY, 1999, 38 (42) :13829-13836
[3]   The crystal structure of thymidylate synthase from Pneumocystis carinii reveals a fungal insert important for drug design [J].
Anderson, AC ;
Perry, KM ;
Freymann, DM ;
Stroud, RM .
JOURNAL OF MOLECULAR BIOLOGY, 2000, 297 (03) :645-657
[4]  
Anderson KS, 1999, METHOD ENZYMOL, V308, P111
[5]  
[Anonymous], ACTA CRYSTALLOGR D
[6]   Kinetic characterization of bifunctional thymidylate Synthase-dihydrofolate reductase (TS-DHFR) from Cryptosporidium hominis -: A paradigm shift for TS activity and channeling behavior [J].
Atreya, CE ;
Anderson, KS .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2004, 279 (18) :18314-18322
[7]   ANALYSIS OF NUMERICAL-METHODS FOR COMPUTER-SIMULATION OF KINETIC PROCESSES - DEVELOPMENT OF KINSIM - A FLEXIBLE, PORTABLE SYSTEM [J].
BARSHOP, BA ;
WRENN, RF ;
FRIEDEN, C .
ANALYTICAL BIOCHEMISTRY, 1983, 130 (01) :134-145
[8]   A perspective on enzyme catalysis [J].
Benkovic, SJ ;
Hammes-Schiffer, S .
SCIENCE, 2003, 301 (5637) :1196-1202
[9]   The separate effects of E60Q in Lactobacillus casei thymidylate synthase delineate between mechanisms for formation of intermediates in catalysis [J].
Birdsall, DL ;
Huang, W ;
Santi, DV ;
Stroud, RM ;
Finer-Moore, J .
PROTEIN ENGINEERING, 1998, 11 (03) :171-183
[10]   Crystallography & NMR system:: A new software suite for macromolecular structure determination [J].
Brunger, AT ;
Adams, PD ;
Clore, GM ;
DeLano, WL ;
Gros, P ;
Grosse-Kunstleve, RW ;
Jiang, JS ;
Kuszewski, J ;
Nilges, M ;
Pannu, NS ;
Read, RJ ;
Rice, LM ;
Simonson, T ;
Warren, GL .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1998, 54 :905-921