Nonconserved residues Ala287 and Ser290 of the Cryptosporidium hominis thymidylate synthase domain facilitate its rapid rate of catalysis

被引:19
作者
Doan, Lanxuan T. [1 ]
Martucci, W. Edward [1 ]
Vargo, Melissa A. [1 ]
Atreya, Chloe E. [1 ]
Anderson, Karen S. [1 ]
机构
[1] Yale Univ, Sch Med, Dept Pharmacol, New Haven, CT 06520 USA
关键词
D O I
10.1021/bi700531r
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Cryptosporidium hominis TS-DHFR exhibits an unusually high rate of catalysis at the TS domain, at least 10-fold greater than those of other TS enzymes. Using site-directed mutagenesis, we have mutated residues Ala287 and Ser290 in the folate-binding helix to phenylalanine and glycine, respectively, the corresponding residues in human and most other TS enzymes. Our results show that the mutant A287F, the mutant S290G, and the double mutant all have reduced affinities for methylene tetrahydrofolate and reduced rates of reaction at the TS domain. Interestingly, the S290G mutant enzyme had the lowest TS activity, with a catalytic efficiency similar to 200-fold lower than that of the wild type (WT). The rate of conformational change of the S290G mutant is similar to 80 times slower than that of WT, resulting in a change in the rate-limiting step from hydride transfer to covalent ternary complex formation. We have determined the crystal structure of ligand-bound S290G mutant enzyme, which shows that the primary effect of the mutation is an increase in the distance between the TS ligands. The kinetic and crystal structure data presented here provide the first evidence explaining the unusually fast TS rate in C. hominis.
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收藏
页码:8379 / 8391
页数:13
相关论文
共 48 条
[31]   Refinement of macromolecular structures by the maximum-likelihood method [J].
Murshudov, GN ;
Vagin, AA ;
Dodson, EJ .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 1997, 53 :240-255
[32]   Phylogenetic classification of protozoa based on the structure of the linker domain in the bifunctional enzyme, dihydrofolate reductase-thymidylate synthase [J].
O'Neil, RH ;
Lilien, RH ;
Donald, BR ;
Stroud, RM ;
Anderson, AC .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2003, 278 (52) :52980-52987
[33]   Processing of X-ray diffraction data collected in oscillation mode [J].
Otwinowski, Z ;
Minor, W .
MACROMOLECULAR CRYSTALLOGRAPHY, PT A, 1997, 276 :307-326
[34]   Structure of human thymidylate synthase suggests advantages of chemotherapy with noncompetitive inhibitors [J].
Phan, J ;
Steadman, DJ ;
Koli, S ;
Ding, WC ;
Minor, W ;
Dunlap, RB ;
Berger, SH ;
Lebioda, L .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2001, 276 (17) :14170-14177
[35]   KINETICS AND MECHANISM OF INTERACTION OF 10-PROPARGYL-5,8-DIDEAZAFOLATE WITH THYMIDYLATE SYNTHASE [J].
POGOLOTTI, AL ;
DANENBERG, PV ;
SANTI, DV .
JOURNAL OF MEDICINAL CHEMISTRY, 1986, 29 (04) :478-482
[36]   An essential role for water in an enzyme reaction mechanism: The crystal structure of the thymidylate synthase mutant E58Q [J].
Sage, CR ;
Rutenber, EE ;
Stout, TJ ;
Stroud, RM .
BIOCHEMISTRY, 1996, 35 (50) :16270-16281
[37]   D221 in thymidylate synthase controls conformation change, and thereby opening of the imidazolidine [J].
Sage, CR ;
Michelitsch, MD ;
Stout, TJ ;
Biermann, D ;
Nissen, R ;
Finer-Moore, J ;
Stroud, RM .
BIOCHEMISTRY, 1998, 37 (39) :13893-13901
[38]   KINETICS AND THERMODYNAMICS OF THE INTERACTION OF 5-FLUORO-2'-DEOXYURIDYLATE WITH THYMIDYLATE SYNTHASE [J].
SANTI, DV ;
MCHENRY, CS ;
RAINES, RT ;
IVANETICH, KM .
BIOCHEMISTRY, 1987, 26 (26) :8606-8613
[39]   CRYSTALLIZATION OF HUMAN THYMIDYLATE SYNTHASE [J].
SCHIFFER, CA ;
DAVISSON, VJ ;
SANTI, DV ;
STROUD, RM .
JOURNAL OF MOLECULAR BIOLOGY, 1991, 219 (02) :161-163
[40]   Crystal structure of human thymidylate synthase: A structural mechanism for guiding substrates into the active site [J].
Schiffer, CA ;
Clifton, IJ ;
Davisson, VJ ;
Santi, DV ;
Stroud, RM .
BIOCHEMISTRY, 1995, 34 (50) :16279-16287