AphidBase: a database for aphid genomic resources

被引：30

作者：

Gauthier, Jean-Pierre

Legeai, Fabrice

Zasadzinski, Alain

Rispe, Claude

Tagu, Denis

机构：

[1] INRA, UMR 1099 BiO3P, F-35653 Rennes, France

[2] INRA, URGI Genoplante Info, F-91000 Evry, France

[3] CNRS INIST, F-54500 Vandoeuvre Les Nancy, France

来源：

BIOINFORMATICS | 2007年 / 23卷 / 06期

关键词：

D O I：

10.1093/bioinformatics/btl682

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

AphidBase aims to (i) store recently acquired genomic resources on aphids and (ii) compare them to other insect resources as functional annotation tools. For that, the Drosophila melanogaster genome has been loaded in the database using the GMOD open source software for a comparison with the 17 069 pea aphid unique transcripts (contigs) and the 13 639 gene transcripts of the Anopheles gambiae. Links to FlyBase and A.gambiae Entrez databases allow a rapid characterization of the putative functions of the aphid sequences. Text mining of the D.melanogaster literature was performed to construct a network of co-cited gene or protein names, which should facilitate functional annotation of aphid homolog sequences. AphidBase represents one of the first genomic databases for a hemipteran insect.

引用

页码：783 / 784

页数：2

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